Query= PFI0645w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) EF-1B
(276 letters)
>YAL003W EFB1 SGDID:S000000003, Chr I from
142176-142255,142622-143162, Verified ORF, "Translation
elongation factor 1 beta; stimulates nucleotide exchange
to regenerate EF-1 alpha-GTP for the next elongation
cycle; part of the EF-1 complex, which facilitates
binding of aminoacyl-tRNA to the ribosomal A site"
Length = 206
Score = 45.8 bits (107), Expect = 7e-10
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 153 RSILIIEIKPKSIDTDIAKIPKLVKQKIVDENIKWGEEVKKLPVAFGLYKLHMSCIIYDD 212
+SI+ +++KP +T++ ++ VK I E + WG + +P+ FG+ KL ++C++ DD
Sbjct: 120 KSIVTLDVKPWDDETNLEEMVANVKA-IEMEGLTWGAH-QFIPIGFGIKKLQINCVVEDD 177
Query: 213 FVNTNELIEKIE 224
V+ ++L + IE
Sbjct: 178 KVSLDDLQQSIE 189
Score = 33.1 bits (74), Expect = 5e-06
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 14 EDYHNLNSFFESHSYVDNYSVGFKDIKIYHQIKTVIKKDTYPHLFRWFHHISS 66
E LN+ SY++ +V D+ ++ ++ YP RWF+HI+S
Sbjct: 10 ETLKQLNASLADKSYIEGTAVSQADVTVFKAFQSA-----YPEFSRWFNHIAS 57
Lambda K H
0.317 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 127
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 206
Length adjustment: 23
Effective length of query: 253
Effective length of database: 183
Effective search space: 46299
Effective search space used: 46299
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (12.0 bits)
S2: 20 (12.3 bits)