>YHR070W TRM5 SGDID:S000001112, Chr VIII from 234883-236382,
           Verified ORF, "tRNA(m(1)G37)methyltransferase,
           methylates a tRNA base adjacent to the anticodon that
           has a role in prevention of frameshifting; highly
           conserved across Archaea, Bacteria, and Eukarya"
          Length = 499

 Score = 93.2 bits (230), Expect = 3e-23
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 14/248 (5%)

Query: 313 EELFELIKEEDIKFQRVKLEFGYDNMNTSEILRKIFP--CINEIIHKFEIIGHIAHLNFC 370
           E+    +KE   +    +    YD     EILR + P   + E+   F I GHIAHLN  
Sbjct: 131 EDALAFLKENSAEIVPHEYVLDYDFWKAEEILRAVLPEQFLEEVPTGFTITGHIAHLNLR 190

Query: 371 DKLESCKKIIAEIILDKNKSIKTVINKKDILNNTHRTFNIELLAGENN-YVTQLKENNIR 429
            + +    +I ++ILDKN  I+ V++K   +    RTF ++++AG+++  V + KE+N  
Sbjct: 191 TEFKPFDSLIGQVILDKNNKIECVVDKVSSIATQFRTFPMKVIAGKSDSLVVEQKESNCT 250

Query: 430 VKLNYELIYWNSKLKKERDRIYN-LVKDNSXXXXXXXXXXXXXXXXXXXXXXXXXNDINE 488
            K ++  +YWNS+L  E +R+     +                            ND+N 
Sbjct: 251 FKFDFSKVYWNSRLHTEHERLVKQYFQPGQVVCDVFAGVGPFAVPAGKKDVIVLANDLNP 310

Query: 489 HAYKYXXXXXXXXXXXXXL-TYNMDGREFLEKLFNLKIFSKNNNVLTLYINDQNQKNISL 547
            +YKY             + ++NMDG +F+          ++  +L  +I D+    I++
Sbjct: 311 ESYKYLKENIALNKVAKTVKSFNMDGADFIR---------QSPQLLQQWIQDEEGGKITI 361

Query: 548 DVLNSKNH 555
            +   K H
Sbjct: 362 PLPLKKRH 369

 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 694 HILMNLPQTALEFL----NVFKKYKKEKNDELRNVFIHCYYFAK 733
           H +MNLP +A+ FL     +F  + K   D ++  ++H + F K
Sbjct: 395 HYVMNLPDSAISFLGNFRGIFAAHTKGATDTIQMPWVHVHCFEK 438

 Score = 18.1 bits (35), Expect = 1.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 213 SHVFNDNSPEQYRQKE 228
           S   ND  P Q R KE
Sbjct: 371 SQQHNDQQPPQPRTKE 386

 Score = 17.7 bits (34), Expect = 1.6
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 70  VNKILKNKRAKFWLLDI----YKFPSVLKY----KEYKNCFLQ 104
           VN+ ++     F++  I     KFP         K +KNC L+
Sbjct: 30  VNRQMRELDRSFFITKIPMCAVKFPEPKNISVFSKNFKNCILR 72

Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 821
Number of extensions: 44
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 5
Length of query: 762
Length of database: 499
Length adjustment: 37
Effective length of query: 725
Effective length of database: 462
Effective search space:   334950
Effective search space used:   334950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)