Query= PFI0860c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) ATP-dependant
RNA helicase, putative
(820 letters)
>FBgn0033160 type=protein;
loc=2R:join(3275033..3275085,3275140..3275933,
3276213..3276686,3276752..3277015,3277583..3277705,
3277773..3278126,3278185..3278312); ID=FBpp0088040;
name=CG11107-PA; parent=FBgn0033160,FBtr0088966;
dbxref=FlyBase:FBpp0088040,
FlyBase_Annotation_IDs:CG11107-PA,GB_protein:AAF59269.1,
GB_protein:AAF59269;
MD5=b1505c072857fdae5e3c1d96813f4446; release=r5.1;
species=Dmel; length=729;
Length = 729
Score = 753 bits (1945), Expect = 0.0
Identities = 380/683 (55%), Positives = 498/683 (72%), Gaps = 9/683 (1%)
Query: 139 NEDDSMINKLTNQKYSQRYLQLLEEKKKLPAWSAXXXXXXXXXXXXVLIIVGDTGSGKTT 198
N+ +N LTN YSQRY L +++ LP + +++VG+TGSGKTT
Sbjct: 44 NKQPPTMNPLTNTPYSQRYQNLYKKRIALPVFEYQADFMRLLSLHQCIVLVGETGSGKTT 103
Query: 199 QISQFVLESKYTE-KKSIAVTQPXXXXXXXXXXXXXEELDVELGTYVGYTIRFEDKSSNK 257
QI Q+ ++ ++ +K ++ TQP EE+DV+LG VGY+IRFED S+ K
Sbjct: 104 QIPQWCVDFAVSKGRKGVSCTQPRRVAAMSVAQRVSEEMDVKLGEEVGYSIRFEDCSTAK 163
Query: 258 TIIKYLTDGMLLRESMSDPLLTKYNTIILDEAHERTLATDILFGVIKNIQEKRNDLKLIV 317
T++KY+TDGMLLRE+MSDP+L +Y I+LDEAHERTLATDIL GV+K + +R+DLKL+V
Sbjct: 164 TLLKYMTDGMLLREAMSDPMLDQYQVILLDEAHERTLATDILMGVLKEVIRQRSDLKLVV 223
Query: 318 MSATLDAEKFQKFFNNSKILNIPGRLFPVEIFYTLQAEKDYVKVVIRTVYDIHINEE-EG 376
MSATLDA KFQ++F+N+ ++ +PGR PVEIFYT + E+DY++ IRTV IH+ EE EG
Sbjct: 224 MSATLDAGKFQQYFDNAPLMKVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEIEG 283
Query: 377 DILVFLTGXXXXXXXXXXXXRVVSR-NMNAGQXXXXXXXXXXXXAQQQKIFEPPPKPRFK 435
DIL+FLTG R + G+ QQ+IFEP P P
Sbjct: 284 DILMFLTGQEEIEEACKRIKREIDNLGSEIGELKCIPLYSTLPPNLQQRIFEPAPPPNAN 343
Query: 436 GDKNGRKCILATNIAETSITIDGIVYVIDPGFSKQKVYNPRARIESLLIAPISKASAEQR 495
G GRK +++TNIAETS+TIDG+V+VIDPGF+KQKVYNPR R+ESLL++PISKASA+QR
Sbjct: 344 G-AIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR 402
Query: 496 AGRAGRTKPGKCFRLYTEKCFEETLPEQTYPEILRSNLGSVVLNLKKLGIDDLVHFDFMD 555
+GRAGRT+PGKCFRLYTEK F+ + + TYPEILRSNLG+VVL LKKLGIDDLVHFDFMD
Sbjct: 403 SGRAGRTRPGKCFRLYTEKAFKNEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMD 462
Query: 556 PPAPETLMRALEQLNYLGALDDEGDLTNKGHLMSEFPVDPQLAKVLIESPNYSCSSEILT 615
PPAPETLMRALE LNYL ALDD+G+LT+ G +MSEFP+DPQLAK+LI S ++CS+EIL+
Sbjct: 463 PPAPETLMRALELLNYLAALDDDGNLTDLGAVMSEFPLDPQLAKMLIASCQHNCSNEILS 522
Query: 616 IAAMLSVPNCFLRPKVKVKEADEMKMRFSHLDGDHLTLLNVFHAYVKHALVDTNESKKFC 675
I AMLSVP CF+RP K ADE KMRF+H+DGDHLTLLNV+HA+ + ++E +C
Sbjct: 523 ITAMLSVPQCFVRPNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQ-----SSEDPNWC 577
Query: 676 FEYFLNHRAMTSAQNVRQQLLRIMERLNLKILSIKPSNPEYYINIRKALLSGFYQQVAYK 735
+E F+N R++ SA NVRQQL RIM+R NL+ S + ++ +YY+NIRKAL+ GF+ QVA+
Sbjct: 578 YENFINFRSLKSADNVRQQLARIMDRFNLRRTSTEFTSKDYYVNIRKALVQGFFMQVAHL 637
Query: 736 TTKGYYITVKDIQMVTLHPSTVFQMNPEWVVYHELLLTSKNFIRTVTKIEGKWLLEIAPN 795
GYY+T+KD Q V LHPST P+WV+Y+E +LT+KN+IRTVT ++ +WL +AP
Sbjct: 638 ERTGYYLTIKDNQNVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDVKPEWLCCLAPQ 697
Query: 796 YYNLEDLPNSEAKNDLKMLHKKL 818
YY+L + P EAK L++L ++L
Sbjct: 698 YYDLNNFPQCEAKRQLELLQQRL 720
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1317
Number of extensions: 37
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 820
Length of database: 729
Length adjustment: 41
Effective length of query: 779
Effective length of database: 688
Effective search space: 535952
Effective search space used: 535952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.1 bits)
S2: 29 (15.8 bits)