>YGL120C PRP43 SGDID:S000003088, Chr VII from 283943-281640, reverse
           complement, Verified ORF, "RNA helicase in the DEAH-box
           family, involved in release of the lariat-intron from
           the spliceosome"
          Length = 767

 Score =  717 bits (1850), Expect = 0.0
 Identities = 372/696 (53%), Positives = 492/696 (70%), Gaps = 12/696 (1%)

Query: 132 HTSVVTNNE-DDSMINKLTNQKYSQRYLQLLEEKKKLPAWSAXXXXXXXXXXXXVLIIVG 190
           HTS     + +D  IN  T ++++ +Y+ +L+ +++LP  +             +++ VG
Sbjct: 57  HTSAEEAQKLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVG 116

Query: 191 DTGSGKTTQISQFVL--ESKYTEKKSIAVTQPXXXXXXXXXXXXXEELDVELGTYVGYTI 248
           +TGSGKTTQI QFVL  E  + E   +A TQP             EE+DV+LG  VGY+I
Sbjct: 117 ETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSI 176

Query: 249 RFEDKSSNKTIIKYLTDGMLLRESMSDPLLTKYNTIILDEAHERTLATDILFGVIKNIQE 308
           RFE+K+SNKTI+KY+TDGMLLRE+M D  L++Y+ IILDEAHERTLATDIL G++K + +
Sbjct: 177 RFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVK 236

Query: 309 KRNDLKLIVMSATLDAEKFQKFFNNSKILNIPGRLFPVEIFYTLQAEKDYVKVVIRTVYD 368
           +R DLK+I+MSATLDAEKFQ++FN++ +L +PGR +PVE++YT + ++DY+   IRTV  
Sbjct: 237 RRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQ 296

Query: 369 IHINEEEGDILVFLTGXXXXXXXXXXXXRV---VSRNMNAGQXXXXXXXXXXXXAQQQKI 425
           IH  EE GDIL+FLTG                 + R    G              QQQ+I
Sbjct: 297 IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356

Query: 426 FEPPPKPRFKGDKNGRKCILATNIAETSITIDGIVYVIDPGFSKQKVYNPRARIESLLIA 485
           FEP P+      + GRK +++TNIAETS+TIDGIVYV+DPGFSKQKVYNPR R+ESLL++
Sbjct: 357 FEPAPESH--NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414

Query: 486 PISKASAEQRAGRAGRTKPGKCFRLYTEKCFEETLPEQTYPEILRSNLGSVVLNLKKLGI 545
           PISKASA+QRAGRAGRT+PGKCFRLYTE+ F++ L EQ+YPEILRSNL S VL LKKLGI
Sbjct: 415 PISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGI 474

Query: 546 DDLVHFDFMDPPAPETLMRALEQLNYLGALDDEGDLTNKGHLMSEFPVDPQLAKVLIESP 605
           DDLVHFDFMDPPAPET+MRALE+LNYL  LDDEG+LT  G L S+FP+DP LA +LI S 
Sbjct: 475 DDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSF 534

Query: 606 NYSCSSEILTIAAMLSVPNCFLRPKVKVKEADEMKMRFSHLDGDHLTLLNVFHAYVKHAL 665
            + CS EILTI AMLSVPN F+RP    K AD+ K  F+H DGDH+TLLNV+HA+     
Sbjct: 535 EFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEA 594

Query: 666 VDTNESKKFCFEYFLNHRAMTSAQNVRQQLLRIMERLNLKILSIKPSNPEYYINIRKALL 725
            +     K+C +++LN+R++++A N+R QL R+M R NL++ +    +P+Y+ NIRKAL 
Sbjct: 595 YEYG-IHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALA 653

Query: 726 SGFYQQVAYKTT--KGYYITVKDIQMVTLHPSTVFQMNPEWVVYHELLLTSKNFIRTVTK 783
           SGF+ QVA K +  KG YITVKD Q V +HPSTV   + EWV+Y+E +LTSKN+IRTVT 
Sbjct: 654 SGFFMQVAKKRSGAKG-YITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTS 712

Query: 784 IEGKWLLEIAPNYYNLEDLPNSEAKNDLKMLHKKLN 819
           +  +WL+EIAP YY+L +    + K  L+ + +K++
Sbjct: 713 VRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVD 748

Lambda     K      H
   0.316    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1383
Number of extensions: 47
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 820
Length of database: 767
Length adjustment: 41
Effective length of query: 779
Effective length of database: 726
Effective search space:   565554
Effective search space used:   565554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)