>YML080W DUS1 SGDID:S000004545, Chr XIII from 108806-110077,
           Verified ORF, "Dihydrouridine synthase, member of a
           widespread family of conserved proteins including Smm1p,
           Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17"
          Length = 423

 Score = 60.1 bits (144), Expect = 2e-13
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 189 RKINEKSTTPFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDXXXXXXXXXXEEH-- 246
           R++ +K   P   VAPM++ +   +R + R        +T M+            E++  
Sbjct: 20  RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLA-YTPMLHAKLFATSKKYREDNWS 78

Query: 247 -LGFDNNEHPIVCQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLM 305
            L   + + P+V Q    D   +  AA LVE    D +++N+GCP   +A KG +G+ LM
Sbjct: 79  SLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDK-CDAVDLNLGCPQG-IAKKGHYGSFLM 136

Query: 306 KNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHARKA 365
           +  + + N++  + K +++PVT KIR   D   S ++ K  ++     G     VH R  
Sbjct: 137 EEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLD----AGAQFLTVHGRVR 192

Query: 366 WLKG 369
             KG
Sbjct: 193 EQKG 196

Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 420
Number of extensions: 22
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 577
Length of database: 423
Length adjustment: 34
Effective length of query: 543
Effective length of database: 389
Effective search space:   211227
Effective search space used:   211227
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)