Query= PFI1060w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(1650 letters)
>YDL189W RBS1 SGDID:S000002348, Chr IV from 122217-123590, Verified
ORF, "Protein of unknown function, identified as a high
copy suppressor of psk1 psk2 mutations that confer
temperature-sensitivity for galactose utilization;
proposed to bind single-stranded nucleic acids via its
R3H domain"
Length = 457
Score = 37.7 bits (86), Expect = 3e-06
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 15/94 (15%)
Query: 967 NKDKLYNVATRKEVNHI--YQDKNNKRKSNCDNTTIGHNNKRRKNEIHDK---DL---KI 1018
N ++++ + RKEV + Y+ N R N + T ++NK +K EI DK DL +I
Sbjct: 121 NNNRIFRILKRKEVGNECDYKIDGNTRTPNSNLTA--NSNKDQKIEIDDKSSTDLEQERI 178
Query: 1019 EEQNFYDQKKKDDID-INESIHFHENVINSINRS 1051
E++ Y+Q+K++ D +N+S E+ + S N S
Sbjct: 179 EKERLYEQRKQEIFDKLNKS----EDDVKSTNSS 208
Score = 19.2 bits (38), Expect = 1.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 607 ESIESINNENIF 618
ESIE NN IF
Sbjct: 115 ESIEKSNNNRIF 126
Score = 18.1 bits (35), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 228 IFILLLKKNNFDFISSIYLSFAL 250
IFI+ L+ + FI+S SF L
Sbjct: 27 IFIIELENSIVSFINSNTESFQL 49
Score = 18.1 bits (35), Expect = 2.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 1373 YSNYLHVLEKYDDAINLLY 1391
Y N HVL + D+ +L+
Sbjct: 66 YHNLNHVLARTQDSCVILF 84
Score = 16.5 bits (31), Expect = 7.0
Identities = 8/48 (16%), Positives = 23/48 (47%)
Query: 956 KSSLCNIDNLLNKDKLYNVATRKEVNHIYQDKNNKRKSNCDNTTIGHN 1003
KSS + K++LY ++ + + + +++ + +N ++ N
Sbjct: 168 KSSTDLEQERIEKERLYEQRKQEIFDKLNKSEDDVKSTNSSGSSDSDN 215
Score = 16.2 bits (30), Expect = 9.1
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 1020 EQNFYDQKK 1028
+Q FYD ++
Sbjct: 254 QQQFYDSRR 262
Lambda K H
0.320 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1829
Number of extensions: 91
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1650
Length of database: 457
Length adjustment: 42
Effective length of query: 1608
Effective length of database: 415
Effective search space: 667320
Effective search space used: 667320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.7 bits)
S2: 30 (16.2 bits)