>YHR088W RPF1 SGDID:S000001130, Chr VIII from 281497-282384,
           Verified ORF, "Nucleolar protein involved in the
           assembly of the large ribosomal subunit; constituent of
           66S pre-ribosomal particles; contains a sigma(70)-like
           motif, which is thought to bind RNA"
          Length = 295

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 67/273 (24%), Positives = 122/273 (44%), Gaps = 39/273 (14%)

Query: 59  RKQKKEEIRNKKALNIPVEKKLPKTIERLSIFDDNKISLENEKFLLNENCIDEFSDYFKN 118
           RK+ KEE  N +     +++ + +TIE   ++D+   ++  E     E   D+   YF +
Sbjct: 35  RKRAKEERENPELREQRLKENVTQTIENTRVYDE---TINKEV----EGDEDDLMRYFNS 87

Query: 119 QKE--PNIIITSIKRPSKNTILFMKELSLTFPHI-FYEPRLDNSIEYLLNNSIQNQFSTF 175
                P I +T+     K+   F   L    P++ F + +    ++ + +  I+  F+  
Sbjct: 88  NSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDI 147

Query: 176 ILIEEGIDHHPKNMFICTLPNGPTAKYSLSNIFYAHKQKSNIEITTLAPEVYITNFNTFI 235
           ++I E         FI  LP GPT  + LS+     K   +   T+  PE+ + NF T +
Sbjct: 148 VIINEDKKKVTGLTFI-HLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRL 206

Query: 236 GERIKRQLHTLVPFKPEYKSQKVVVFYNQRDFIFFRHYKSYHTHTHXXXXXXXXXXXXXX 295
           G+ + R   +++P  P+ + ++V+  +NQRD+IFFR ++                     
Sbjct: 207 GQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYV------------------- 247

Query: 296 XXXXXXXXNFVDKKKCNLSEIGPGFTLQLLSLK 328
                    F D ++  L E+GP FTL+L  L+
Sbjct: 248 ---------FKDNERVGLQELGPQFTLKLKRLQ 271

 Score = 15.8 bits (29), Expect = 1.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 31  YNTLSRFVKNKNRKNALKGKAYIKKLVL 58
           Y  LS FV+ K      +  ++I +L+L
Sbjct: 172 YFKLSSFVEVKKIVGHGRPTSHIPELIL 199

 Score = 15.4 bits (28), Expect = 2.3
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 264 QRDFIFFRHYKSYHTHT 280
           Q  F   +H K+   HT
Sbjct: 16  QEIFADIKHEKNKERHT 32

 Score = 13.5 bits (23), Expect = 8.6
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 1   MNKKEKK 7
           M+K++KK
Sbjct: 286 MDKEKKK 292

Lambda     K      H
   0.322    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 381
Number of extensions: 24
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 6
Length of query: 395
Length of database: 295
Length adjustment: 29
Effective length of query: 366
Effective length of database: 266
Effective search space:    97356
Effective search space used:    97356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)