>YIL021W RPB3 SGDID:S000001283, Chr IX from 312903-313859, Verified
           ORF, "RNA polymerase II third largest subunit B44, part
           of central core; similar to prokaryotic alpha subunit"
          Length = 318

 Score =  101 bits (251), Expect = 3e-26
 Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 7/186 (3%)

Query: 12  QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71
           Q+ I + +KD + F L N +  +AN+LRR+M++EIPTLAID V V  NT+   DEFIAHR
Sbjct: 7   QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66

Query: 72  LGLIPIDSRNVNNYEFRXXXXXXXXXXXXXIQYIIEVKCNHSNKIDVSHYDIESLEH--E 129
           LGLIP+ S ++   E+              +   ++      +  +V   D+  + +   
Sbjct: 67  LGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMG 126

Query: 130 PNVPMPIPHGNKNSVSENAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSYRIDH 188
            N+  PI    +     N + I  L K Q L +  +A KGI K HAKW P A + +  D 
Sbjct: 127 RNIGHPIIQDKEG----NGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDP 182

Query: 189 KVLIKH 194
              +KH
Sbjct: 183 WNKLKH 188

 Score = 34.3 bits (77), Expect = 4e-06
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 272 FHFHVESVGSIPPEQIVQMAIDILENKL 299
           F+ +VESVGSIP +Q+V   ID L+ K+
Sbjct: 228 FYMNVESVGSIPVDQVVVRGIDTLQKKV 255

Lambda     K      H
   0.317    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 250
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 318
Length adjustment: 28
Effective length of query: 307
Effective length of database: 290
Effective search space:    89030
Effective search space used:    89030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.4 bits)
S2: 23 (13.5 bits)