Query= PFI1235w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical protein (413 letters)
>YDR083W RRP8 SGDID:S000002490, Chr IV from 612069-613247, Verified
           ORF, "Protein involved in rRNA processing; involved in
           pre-rRNA cleavage at site A2; mutation is synthetically
           lethal with a gar1 mutation"
          Length = 392

 Score =  106 bits (265), Expect = 1e-27
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 54/272 (19%)

Query: 196 VNSSLFRYINEYMYTNNSEVVQNKLNQTKNVFNIYHQGYKNQKNKWPHNPVSIIIKHLK- 254
           +  S FR+INE +YT +S+     + +   +F+ YH G+++Q   WP NPV + +  ++ 
Sbjct: 121 LTGSRFRWINEQLYTISSDEALKLIKEQPQLFDEYHDGFRSQVQAWPENPVDVFVDQIRY 180

Query: 255 ---KYFN--------KNNK---IADLGCGEAEIARTLDGWY----------------IKS 284
              K  N        K++K   IAD+GCGEA++A  ++ ++                + S
Sbjct: 181 RCMKPVNAPGGLPGLKDSKEIVIADMGCGEAQLALEINNFFKNYNKKAKKYLKRRHKVHS 240

Query: 285 FDLIQYNHYVTPCNITQLPLNNNSYDCFILSLSLMNTDWPKIIFESVRCLKKGATLIIAE 344
           FDL + N  +T  +I  +PL + S    +  L+LM T++   I E+ R L     L IAE
Sbjct: 241 FDLKKANERITVADIRNVPLPDESCTIVVFCLALMGTNFLDFIKEAYRILAPRGELWIAE 300

Query: 345 VVSRFTNYKA--FIKFMNNVGFKLSNKINLDDFFYVFFF------------------EKN 384
           + SRF++ K   F+  +  +GF      + +  F  F F                  +K 
Sbjct: 301 IKSRFSDGKGNEFVDALKLMGFFHKKTFDENKMFTRFEFFKPPAEIIEERRQKLERRQKF 360

Query: 385 QEVDISSSINEKRIKKVSS---LLTPCIYKRR 413
            EV+      EK+ +K++    LL PCIYKRR
Sbjct: 361 IEVETEKEELEKKRRKIAEGKWLLKPCIYKRR 392

 Score = 15.8 bits (29), Expect = 2.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 382 EKNQEVDISSSINEKR 397
           +KNQE    +  ++KR
Sbjct: 72  KKNQEKSDQNETSKKR 87
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 301
Number of extensions: 14
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 392
Length adjustment: 31
Effective length of query: 382
Effective length of database: 361
Effective search space:   137902
Effective search space used:   137902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)