Query= PFI1235w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(413 letters)
>YDR083W RRP8 SGDID:S000002490, Chr IV from 612069-613247, Verified
ORF, "Protein involved in rRNA processing; involved in
pre-rRNA cleavage at site A2; mutation is synthetically
lethal with a gar1 mutation"
Length = 392
Score = 106 bits (265), Expect = 1e-27
Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 54/272 (19%)
Query: 196 VNSSLFRYINEYMYTNNSEVVQNKLNQTKNVFNIYHQGYKNQKNKWPHNPVSIIIKHLK- 254
+ S FR+INE +YT +S+ + + +F+ YH G+++Q WP NPV + + ++
Sbjct: 121 LTGSRFRWINEQLYTISSDEALKLIKEQPQLFDEYHDGFRSQVQAWPENPVDVFVDQIRY 180
Query: 255 ---KYFN--------KNNK---IADLGCGEAEIARTLDGWY----------------IKS 284
K N K++K IAD+GCGEA++A ++ ++ + S
Sbjct: 181 RCMKPVNAPGGLPGLKDSKEIVIADMGCGEAQLALEINNFFKNYNKKAKKYLKRRHKVHS 240
Query: 285 FDLIQYNHYVTPCNITQLPLNNNSYDCFILSLSLMNTDWPKIIFESVRCLKKGATLIIAE 344
FDL + N +T +I +PL + S + L+LM T++ I E+ R L L IAE
Sbjct: 241 FDLKKANERITVADIRNVPLPDESCTIVVFCLALMGTNFLDFIKEAYRILAPRGELWIAE 300
Query: 345 VVSRFTNYKA--FIKFMNNVGFKLSNKINLDDFFYVFFF------------------EKN 384
+ SRF++ K F+ + +GF + + F F F +K
Sbjct: 301 IKSRFSDGKGNEFVDALKLMGFFHKKTFDENKMFTRFEFFKPPAEIIEERRQKLERRQKF 360
Query: 385 QEVDISSSINEKRIKKVSS---LLTPCIYKRR 413
EV+ EK+ +K++ LL PCIYKRR
Sbjct: 361 IEVETEKEELEKKRRKIAEGKWLLKPCIYKRR 392
Score = 15.8 bits (29), Expect = 2.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 382 EKNQEVDISSSINEKR 397
+KNQE + ++KR
Sbjct: 72 KKNQEKSDQNETSKKR 87
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 301
Number of extensions: 14
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 392
Length adjustment: 31
Effective length of query: 382
Effective length of database: 361
Effective search space: 137902
Effective search space used: 137902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)