Query= PFI1265w Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical protein (1754 letters)
>YHR077C NMD2 SGDID:S000001119, Chr VIII from
            255758-255753,255639-252376, reverse complement, Verified
            ORF, "Protein involved in the nonsense-mediated mRNA
            decay (NMD) pathway; interacts with Nam7p and Upf3p"
          Length = 1089

 Score = 68.9 bits (167), Expect = 3e-15
 Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 18/230 (7%)

Query: 1222 TVEQEQKKYFLKKLLFEDIEYKDTEIICKYIRKFNWNDSFFLYILKKYIFKYLMYMSIYQ 1281
            T+  EQ+  F + L+  ++   D + I K +RK +W+D     +L   +F     +S   
Sbjct: 572  TITPEQQ--FYRILIRSELSSLDFKHIVKLVRKAHWDDVAIQKVLFS-LFSKPHKISYQN 628

Query: 1282 INNLASLLYQLAKYKPQFVIHIIDELYEKIINTLESNDFKQYTFLIQYTHLFADLYNYKI 1341
            I  L  +L  L  Y+  FVI  ID++ E I   LE ND+ Q    I       +++N+++
Sbjct: 629  IPLLTKVLGGLYSYRRDFVIRCIDQVLENIERGLEINDYGQNMHRISNVRYLTEIFNFEM 688

Query: 1342 LNSTNVLDLLYYLISLTDINICYMHEINYLYPFFL------ENKKFIEHIKVGIYNIGNV 1395
            + S  +LD +Y++I    IN       N   PF+L      +N   I+ +   + NI   
Sbjct: 689  IKSDVLLDTIYHIIRFGHIN-------NQPNPFYLNYSDPPDNYFRIQLVTTILLNINRT 741

Query: 1396 DSEF-NKITTILDMKRNRNKIQEKDLEKKQTCEIYSTDERDEENTINNKK 1444
             + F  K   +L        I+E+ L K+    + ST ++  EN   N K
Sbjct: 742  PAAFTKKCKLLLRFFEYYTFIKEQPLPKETEFRVSSTFKK-YENIFGNTK 790

 Score = 24.3 bits (51), Expect = 0.089
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 75  FINKLKNTSITELEKNHLKLLQEDIKRLNISKYIGEILSYIFDLCYHV 122
           FI KLK   +   E + LK    D+   ++ KY+ EI+  + +   +V
Sbjct: 40  FIKKLKKGFVKGSESSLLK----DLSEASLEKYLSEIIVTVTECLLNV 83

 Score = 24.3 bits (51), Expect = 0.089
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 787 VWINDEEKAFYTIFPDYS 804
           +W N++ + FY I PD S
Sbjct: 337 LWENEDTRKFYEILPDIS 354

 Score = 24.3 bits (51), Expect = 0.089
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1235 LLFEDIEYKDTEIICKYIRKFNWNDSFFLYILKKYIFKYLMYMSIY-QINNLASLLYQLA 1293
            L F D+E  D + I   +    W+        +  I K+ M    + ++   +  +   +
Sbjct: 378  LFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNS 437

Query: 1294 KYKPQFVIHIIDELYEKIINTLESNDFKQYTFLIQYTHLFADLYNYKILNSTNVLDLLYY 1353
            KY P+ V   I+ L     + L SN        ++    F+++  ++++ S  +   +  
Sbjct: 438  KYMPEIVSEFINYLDNGFRSQLHSNKIN-----VKNIIFFSEMIKFQLIPSFMIFHKIRT 492

Query: 1354 LI 1355
            LI
Sbjct: 493  LI 494

 Score = 20.4 bits (41), Expect = 1.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 1417 EKDLEKKQTCEIYSTDERDEE 1437
            ++D+E K+  E Y    +DEE
Sbjct: 946  DRDIEMKRMYEEYERKLKDEE 966

 Score = 20.0 bits (40), Expect = 1.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 988  EKLLNMNNEKDLENYVML 1005
            ++ LNMN +  LEN + L
Sbjct: 540  DRQLNMNMKSALENIITL 557

 Score = 19.2 bits (38), Expect = 2.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 1733 NIKNITLYTNLIK 1745
            N+KNI  ++ +IK
Sbjct: 465  NVKNIIFFSEMIK 477

 Score = 19.2 bits (38), Expect = 2.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query: 1495 NIKMICIILEKCGKY 1509
            N++++ ++LE  GK+
Sbjct: 502  NVEILTVLLEHSGKF 516

 Score = 19.2 bits (38), Expect = 2.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 86   ELEKNHLKLLQEDIKRLNISKYIGEILSYI 115
            ELE+   K++QE I      K +   +  I
Sbjct: 973  ELERQFQKMMQESIDARKSEKVVASKIPVI 1002

 Score = 18.5 bits (36), Expect = 4.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 1034 IPYYCRYICIINKYAKDM 1051
            +P Y R+I   +KY  ++
Sbjct: 426  LPVYSRFIATNSKYMPEI 443

 Score = 17.7 bits (34), Expect = 8.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 1422 KKQTCEIYSTDERDEENTINNKKNVYDDE 1450
            K Q  +  S DE DE++  ++  +  DD+
Sbjct: 878  KHQAKQDESEDEDDEDDDEDDDDDDDDDD 906

 Score = 17.7 bits (34), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 845  IMSSNTQNKSDVQKIKYSILKR 866
            ++    + K++  KIK  +LKR
Sbjct: 1065 VLEEEEKLKTERNKIKKIVLKR 1086
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3721
Number of extensions: 211
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 1754
Length of database: 1089
Length adjustment: 49
Effective length of query: 1705
Effective length of database: 1040
Effective search space:  1773200
Effective search space used:  1773200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (18.6 bits)
S2: 34 (17.7 bits)