Query= PFI1265w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(1754 letters)
>YHR077C NMD2 SGDID:S000001119, Chr VIII from
255758-255753,255639-252376, reverse complement, Verified
ORF, "Protein involved in the nonsense-mediated mRNA
decay (NMD) pathway; interacts with Nam7p and Upf3p"
Length = 1089
Score = 68.9 bits (167), Expect = 3e-15
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 18/230 (7%)
Query: 1222 TVEQEQKKYFLKKLLFEDIEYKDTEIICKYIRKFNWNDSFFLYILKKYIFKYLMYMSIYQ 1281
T+ EQ+ F + L+ ++ D + I K +RK +W+D +L +F +S
Sbjct: 572 TITPEQQ--FYRILIRSELSSLDFKHIVKLVRKAHWDDVAIQKVLFS-LFSKPHKISYQN 628
Query: 1282 INNLASLLYQLAKYKPQFVIHIIDELYEKIINTLESNDFKQYTFLIQYTHLFADLYNYKI 1341
I L +L L Y+ FVI ID++ E I LE ND+ Q I +++N+++
Sbjct: 629 IPLLTKVLGGLYSYRRDFVIRCIDQVLENIERGLEINDYGQNMHRISNVRYLTEIFNFEM 688
Query: 1342 LNSTNVLDLLYYLISLTDINICYMHEINYLYPFFL------ENKKFIEHIKVGIYNIGNV 1395
+ S +LD +Y++I IN N PF+L +N I+ + + NI
Sbjct: 689 IKSDVLLDTIYHIIRFGHIN-------NQPNPFYLNYSDPPDNYFRIQLVTTILLNINRT 741
Query: 1396 DSEF-NKITTILDMKRNRNKIQEKDLEKKQTCEIYSTDERDEENTINNKK 1444
+ F K +L I+E+ L K+ + ST ++ EN N K
Sbjct: 742 PAAFTKKCKLLLRFFEYYTFIKEQPLPKETEFRVSSTFKK-YENIFGNTK 790
Score = 24.3 bits (51), Expect = 0.089
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 75 FINKLKNTSITELEKNHLKLLQEDIKRLNISKYIGEILSYIFDLCYHV 122
FI KLK + E + LK D+ ++ KY+ EI+ + + +V
Sbjct: 40 FIKKLKKGFVKGSESSLLK----DLSEASLEKYLSEIIVTVTECLLNV 83
Score = 24.3 bits (51), Expect = 0.089
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 787 VWINDEEKAFYTIFPDYS 804
+W N++ + FY I PD S
Sbjct: 337 LWENEDTRKFYEILPDIS 354
Score = 24.3 bits (51), Expect = 0.089
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Query: 1235 LLFEDIEYKDTEIICKYIRKFNWNDSFFLYILKKYIFKYLMYMSIY-QINNLASLLYQLA 1293
L F D+E D + I + W+ + I K+ M + ++ + + +
Sbjct: 378 LFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNS 437
Query: 1294 KYKPQFVIHIIDELYEKIINTLESNDFKQYTFLIQYTHLFADLYNYKILNSTNVLDLLYY 1353
KY P+ V I+ L + L SN ++ F+++ ++++ S + +
Sbjct: 438 KYMPEIVSEFINYLDNGFRSQLHSNKIN-----VKNIIFFSEMIKFQLIPSFMIFHKIRT 492
Query: 1354 LI 1355
LI
Sbjct: 493 LI 494
Score = 20.4 bits (41), Expect = 1.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1417 EKDLEKKQTCEIYSTDERDEE 1437
++D+E K+ E Y +DEE
Sbjct: 946 DRDIEMKRMYEEYERKLKDEE 966
Score = 20.0 bits (40), Expect = 1.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 988 EKLLNMNNEKDLENYVML 1005
++ LNMN + LEN + L
Sbjct: 540 DRQLNMNMKSALENIITL 557
Score = 19.2 bits (38), Expect = 2.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 1733 NIKNITLYTNLIK 1745
N+KNI ++ +IK
Sbjct: 465 NVKNIIFFSEMIK 477
Score = 19.2 bits (38), Expect = 2.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 1495 NIKMICIILEKCGKY 1509
N++++ ++LE GK+
Sbjct: 502 NVEILTVLLEHSGKF 516
Score = 19.2 bits (38), Expect = 2.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 86 ELEKNHLKLLQEDIKRLNISKYIGEILSYI 115
ELE+ K++QE I K + + I
Sbjct: 973 ELERQFQKMMQESIDARKSEKVVASKIPVI 1002
Score = 18.5 bits (36), Expect = 4.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1034 IPYYCRYICIINKYAKDM 1051
+P Y R+I +KY ++
Sbjct: 426 LPVYSRFIATNSKYMPEI 443
Score = 17.7 bits (34), Expect = 8.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1422 KKQTCEIYSTDERDEENTINNKKNVYDDE 1450
K Q + S DE DE++ ++ + DD+
Sbjct: 878 KHQAKQDESEDEDDEDDDEDDDDDDDDDD 906
Score = 17.7 bits (34), Expect = 8.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 845 IMSSNTQNKSDVQKIKYSILKR 866
++ + K++ KIK +LKR
Sbjct: 1065 VLEEEEKLKTERNKIKKIVLKR 1086
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3721
Number of extensions: 211
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 1754
Length of database: 1089
Length adjustment: 49
Effective length of query: 1705
Effective length of database: 1040
Effective search space: 1773200
Effective search space used: 1773200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (18.6 bits)
S2: 34 (17.7 bits)