Query= PFI1435w Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) RNA binding
function, putative
(289 letters)
>FBgn0037701 type=protein;
loc=3R:complement(5331866..5331921,5331980..5333108,
5334013..5334151,5335158..5335732); ID=FBpp0081601;
name=CG9373-PA; parent=FBgn0037701,FBtr0082123;
dbxref=FlyBase:FBpp0081601,
FlyBase_Annotation_IDs:CG9373-PA,GB_protein:AAF54387.1,
GB_protein:AAF54387;
MD5=dc68983fbe3fceaa9fb39c681c9eae55; release=r5.1;
species=Dmel; length=632;
Length = 632
Score = 39.3 bits (90), Expect = 2e-07
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 187 QNNFFDKNMALYNNSTKNIYDTHKN------------NTIIVTNVPTYLNAEDIFSAFQE 234
+NNF + N+S N+Y + N + V N+ ++ + + F+
Sbjct: 195 RNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKL 254
Query: 235 TGKIIDVQILMNEKRKLTGIVSIEYEKNESASDAVRMYDGGFLNDNRIRVFLD 287
GK+ V + ++++ G IEY+ A A+ M D L D R+ V LD
Sbjct: 255 AGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLD 307
Score = 34.3 bits (77), Expect = 7e-06
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 177 YNNMPPANAYQNNFFDKNMALYNNSTKN-IYDTHKNNTIIVTNVPTYLNAEDIFSAFQET 235
YN P + Y N+ N + N + + K++TII+ NVP + + F+E
Sbjct: 530 YNTGNPLDVYGGG---SNVGNSNVGSANAVGASRKSDTIIIKNVPITCTWQTLRDKFREI 586
Query: 236 GKIIDVQILMNEKRKLTGIVSIEYEKNESASDAVRMYDGGFLNDNRIRV 284
G + +I N+ G+V + K A A+ + DG L+ I+V
Sbjct: 587 GDVKFAEIRGND----VGVV--RFFKERDAELAIALMDGSRLDGRNIKV 629
Score = 27.3 bits (59), Expect = 0.001
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 210 KNNTIIVTNVPTYLNAEDIFSAFQE-TGKIIDVQILMNEKRKLTGIVSIEYEKNESASDA 268
+N + ++N+P +D+ F+ G I VQ+ +E K G +E++ E+ A
Sbjct: 55 RNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKA 114
Query: 269 V 269
+
Sbjct: 115 L 115
Score = 20.4 bits (41), Expect = 0.11
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 46 HSIIISNVNSK--NLELYKKEFSKFGKIYNI-----YHDNEKKITYVKYDNKNSCDTAIS 98
+ + ++N++ K N +L K+ F GK+ ++ N + ++YD+ AIS
Sbjct: 232 NKVFVANLDYKVDNKKL-KQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAIS 290
Query: 99 TMNNQ 103
++ Q
Sbjct: 291 MLDRQ 295
Score = 16.9 bits (32), Expect = 1.2
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 178 NNMPPANAYQNN 189
+N+PP+N +N
Sbjct: 466 DNLPPSNVGLSN 477
Score = 14.6 bits (26), Expect = 6.1
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 5 NKIDMSLDELIEKEN 19
N+ +++ EL+ KE+
Sbjct: 119 NRYEVNGRELVVKED 133
Score = 14.6 bits (26), Expect = 6.1
Identities = 4/7 (57%), Positives = 7/7 (100%)
Query: 7 IDMSLDE 13
+D+SLD+
Sbjct: 261 VDLSLDK 267
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 418
Number of extensions: 32
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 8
Length of query: 289
Length of database: 632
Length adjustment: 32
Effective length of query: 257
Effective length of database: 600
Effective search space: 154200
Effective search space used: 154200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.3 bits)
S2: 25 (14.2 bits)