>YGL044C RNA15 SGDID:S000003012, Chr VII from 417040-416150,
          reverse complement, Verified ORF, "Cleavage and
          polyadenylation factor I (CF I) component involved in
          cleavage and polyadenylation of mRNA 3' ends; interacts
          with the A-rich polyadenylation signal in complex with
          Rna14p and Hrp1p"
          Length = 296

 Score = 62.4 bits (150), Expect = 3e-14
 Identities = 26/71 (36%), Positives = 48/71 (67%)

Query: 10 LWIGNIPFDITENELYEILCKVGVVRNVRIKYDVDKNMSKGFAFCEYKDVETCLLAFKYI 69
          +++G+IP+D TE ++ ++   VG V N+++ +D     SKG+AF E++D+E+   A + +
Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79

Query: 70 NGYEIKGRKLK 80
          NGY++  R LK
Sbjct: 80 NGYQLGSRFLK 90

 Score = 24.3 bits (51), Expect = 0.010
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 460 RDYKNADGNNKTNANHN 476
           + Y N +GNN  N N+N
Sbjct: 108 QQYNNINGNNNNNGNNN 124

 Score = 18.5 bits (36), Expect = 0.53
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 464 NADGNNKTNAN 474
           N +GNN  N+N
Sbjct: 118 NNNGNNNNNSN 128

 Score = 18.1 bits (35), Expect = 0.69
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 547 NEQFIDENNYEEDKYMN-NGSVLTNGTYDNKMNDIPDYMRT 586
           N      +  ++ +Y N NG+   NG  +N  N  PD+  +
Sbjct: 96  NSDISGVSQQQQQQYNNINGNNNNNGNNNNNSN-GPDFQNS 135

 Score = 16.5 bits (31), Expect = 2.0
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 9/37 (24%)

Query: 530 YQNVFHGNTTPNNDNRKNEQFIDENNYEEDKYMNNGS 566
           Y N+   N    N+N         NN     + N+G+
Sbjct: 110 YNNINGNNNNNGNNN---------NNSNGPDFQNSGN 137

 Score = 16.5 bits (31), Expect = 2.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 591 NNIHNMNTNIYYNN 604
           NNI+  N N   NN
Sbjct: 111 NNINGNNNNNGNNN 124

 Score = 15.4 bits (28), Expect = 4.4
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 591 NNIHNMNTNIYYNNLEKRAAGGLYNTKPGVETLPS 625
           NN +N N N   N  + + +G           LPS
Sbjct: 116 NNNNNGNNNNNSNGPDFQNSGNANFLSQKFPELPS 150

 Score = 14.2 bits (25), Expect = 9.9
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 690 NNQNNEH 696
           NN NN +
Sbjct: 122 NNNNNSN 128

Lambda     K      H
   0.313    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 640
Number of extensions: 47
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 8
Length of query: 761
Length of database: 296
Length adjustment: 33
Effective length of query: 728
Effective length of database: 263
Effective search space:   191464
Effective search space used:   191464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.2 bits)
S2: 25 (14.2 bits)