>YLR163C MAS1 SGDID:S000004153, Chr XII from 493256-491868, reverse
           complement, Verified ORF, "Smaller subunit of the
           mitochondrial processing protease, essential processing
           enzyme that cleaves the N-terminal targeting sequences
           from mitochondrially imported proteins"
          Length = 462

 Score =  297 bits (761), Expect = 5e-85
 Identities = 167/443 (37%), Positives = 263/443 (59%), Gaps = 11/443 (2%)

Query: 40  PITRVTELSNKLKVATVHT-NCEIPTIGLWISSGSKYENKKNNGVAHFLEHMIFKGTKKR 98
           P TR ++L N L +AT +  N    T+G+++ +GS+ EN KNNG AHFLEH+ FKGT+ R
Sbjct: 24  PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNR 83

Query: 99  NRIQLEKEIENMGAHLNAYTAREQTGYYCKCFKNDIKWCIELLSDILSNSIFDDNLIELE 158
           ++  +E EIEN+G+HLNAYT+RE T YY K  + DI   +++LSDIL+ S+ D++ IE E
Sbjct: 84  SQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERE 143

Query: 159 KHVILREMEEVEKCKDEVIFDKLHMTAFRDHPLGFTILGPEENIKNMKRKDIIDYINKNY 218
           + VI+RE EEV+K  DEV+FD LH   ++D PLG TILGP +NIK++ R D+ DYI KNY
Sbjct: 144 RDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNY 203

Query: 219 TSDRMVLCAVGDVQHEEIVKLAELNFNHLKTQEQKNNSIIHNNNDKPFFCGSEIIIRDDD 278
             DRMVL   G V HE++V+ A+  F H+   E     +       P FC  E  I+ ++
Sbjct: 204 KGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESP-VPLGSPRGPLPVFCRGERFIK-EN 261

Query: 279 SGPNAHVAVAFEGVPWNSPDSITFMLMQCIIGTYKKNEEGILPGKLSANRTVNNICNKMT 338
           + P  H+A+A EGV W++PD    +  Q I+G +   +  I  G  S +     +     
Sbjct: 262 TLPTTHIAIALEGVSWSAPDYFVALATQAIVGNW---DRAIGTGTNSPSPLA--VAASQN 316

Query: 339 VGCADYFTSFNTCYNNTGLFGFYVQCD--EIAVEHALGELMFGVTSL-SYSITDEEVELA 395
              A+ + SF+T Y ++GL+G Y+  D  E  V+  + E++     + S  I+D EV  A
Sbjct: 317 GSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVQLIVNEILKEWKRIKSGKISDAEVNRA 376

Query: 396 KIHLKTQLISMFESSSTLAEEVSRQLLVYGRKISLAEFILRLNEIDTEEVKRVAWKYLHD 455
           K  LK  L+   + S+ + E++ RQ++  G+++S  E   ++++I  +++   A   L +
Sbjct: 377 KAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQN 436

Query: 456 RDIAVAAIGALHGMPQYIDLRQK 478
           + +++ A+G    +P    + +K
Sbjct: 437 KPVSMVALGNTSTVPNVSYIEEK 459

 Score = 18.5 bits (36), Expect = 0.53
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 196 LGPEE---NIKNMKRKDIIDYINKNYTSDRMVLCAVGDVQHEEIVKLAELNFN 245
           L PEE    +  + + DII + N    +  + + A+G+      V   E   N
Sbjct: 409 LSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 461

Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 533
Number of extensions: 25
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 484
Length of database: 462
Length adjustment: 33
Effective length of query: 451
Effective length of database: 429
Effective search space:   193479
Effective search space used:   193479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.9 bits)
S2: 26 (14.6 bits)