>YDL091C UBX3 SGDID:S000002249, Chr IV from 294759-293392, reverse
           complement, Uncharacterized ORF, "UBX (ubiquitin
           regulatory X) domain-containing protein that interacts
           with Cdc48p, green fluorescent protein (GFP)-fusion
           protein localizes to the cytoplasm in a punctate
           pattern"
          Length = 455

 Score = 48.1 bits (113), Expect = 7e-10
 Identities = 64/312 (20%), Positives = 117/312 (37%), Gaps = 23/312 (7%)

Query: 232 FTKYYENKYSKVHTDFFRGSLKEAINKSRREEKLLLVYLHIEYDD--VSY----FCEHVF 285
           F   Y  +         + S  E ++    + K  ++YLH    D  + Y     C   F
Sbjct: 149 FGSLYNPENGTFSKSIMQNSYTELLDACSEQVKFGVIYLHDPLLDNHMDYVNKILCSEAF 208

Query: 286 NNLEMKSFFDENCILYAHDISKGDIKELSTTLNVFMLPQISIILTCYVTDMMELSIIYGQ 345
            N+  K       +L+  D++  +  ++S  L +   P + II +      +EL I   +
Sbjct: 209 VNMIRKY----QVLLWYGDVTTSEGLQVSNALKIRQYPLLGII-SLKAEKKIEL-IARVE 262

Query: 346 PSITHIMNTISHCIXXXXXXXXXXXXXXNKNYR-DRLIREEQDREYQEALRKDRLXXXXX 404
            SI++        I               +N    RLIR++QD  YQ++LR+D+      
Sbjct: 263 GSISNYKAQDLEAIFSKNYSRLIQLRQQRQNIEMQRLIRQQQDSRYQDSLRRDQQRESER 322

Query: 405 XXXXXXXLVXXXXXXXXXXXXXXXXXXFPLCISSNEQIAKICIRLPNGIRIQNNFGLSNT 464
                   +                       SS++  +K+ IRL NG R+   F  S  
Sbjct: 323 LEQTQREQMEREHQRIENQWLLWRKSQLKPEPSSDKDASKVAIRLENGQRLVRKFDASLP 382

Query: 465 LQDIYEWAECS--EFLQPQNQKVII--------PYKFQLICSLTKWNVQRTSEQIKNFDL 514
            ++IY + E    + L  +N  + +         Y F+LI  + +  +  +++      +
Sbjct: 383 TEEIYAFVELQLHDMLNSENDTLPVYQPANYQHQYSFKLITPVPRRELDLSTKISDVSGI 442

Query: 515 YPNAIFNMKSLD 526
           YP+    M+ LD
Sbjct: 443 YPSGNIVMERLD 454

 Score = 15.8 bits (29), Expect = 3.7
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 135 GNIEEGNTLNNYEINEEEHV 154
           GN ++G+  ++   NE   V
Sbjct: 126 GNNDDGSNTDSTSNNESSGV 145

Lambda     K      H
   0.320    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 383
Number of extensions: 14
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 531
Length of database: 455
Length adjustment: 34
Effective length of query: 497
Effective length of database: 421
Effective search space:   209237
Effective search space used:   209237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.9 bits)
S2: 26 (14.6 bits)