Query= PFL0075w Pf Annotation|Plasmodium_falciparum_Stanford|(protein coding) XPA binding protein 1, putative (497 letters)
>YJR072C NPA3 SGDID:S000003833, Chr X from 572039-570882, reverse
           complement, Verified ORF, "Cytoplasmic protein required
           for cell viability, identified by association with
           pre-ribosomal particles"
          Length = 385

 Score =  258 bits (660), Expect = 2e-73
 Identities = 133/261 (50%), Positives = 177/261 (67%), Gaps = 11/261 (4%)

Query: 208 TVIIVIGMAGSGKTTYVGSLYNYLKVEQKKKVYTMNLDPAVKYVQYPLNIDIRDSIKYHE 267
           + II IGMAGSGKTT++  L ++L+ E K   Y +NLDPAV  V Y  NIDIRDSIKY +
Sbjct: 4   STIICIGMAGSGKTTFMQRLNSHLRAE-KTPPYVINLDPAVLRVPYGANIDIRDSIKYKK 62

Query: 268 IMKEYKLGPNGAIMTCLNLFATRFDKVIEILEKRKSKLHYIIVDTPGQIEVFNWSASGNI 327
           +M+ Y+LGPNGAI+T LNLF+T+ D+VI ++E++K K    I+DTPGQIE F WSASG I
Sbjct: 63  VMENYQLGPNGAIVTSLNLFSTKIDQVIRLVEQKKDKFQNCIIDTPGQIECFVWSASGAI 122

Query: 328 ILETLSVSFPVVINYIIDTVRCERPITFMSNMLYACSVLYKSRLPFLACFNKTDIIKHDK 387
           I E+ + SFP VI YI+DT R   P TFMSNMLYACS+LYK++LP +  FNKTD+ K D 
Sbjct: 123 ITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVCKADF 182

Query: 388 CIEWMTNYDTFNDDVLNDE----------SYMASFSRSCALMINEFYEGIKTVGVSSKTN 437
             EWMT++++F   +  D+           YM+S   S +LM+ EFY  +  VGVSS T 
Sbjct: 183 AKEWMTDFESFQAAIKEDQDLNGDNGLGSGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTG 242

Query: 438 EGFNNILKNLQILKEEYLNEY 458
           +GF+  ++ +    +EY   Y
Sbjct: 243 DGFDEFMQCVDKKVDEYDQYY 263
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 450
Number of extensions: 25
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 385
Length adjustment: 32
Effective length of query: 465
Effective length of database: 353
Effective search space:   164145
Effective search space used:   164145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.2 bits)
S2: 25 (14.2 bits)