Query= PFL0075w Pf
Annotation|Plasmodium_falciparum_Stanford|(protein coding) XPA binding
protein 1, putative
(497 letters)
>YJR072C NPA3 SGDID:S000003833, Chr X from 572039-570882, reverse
complement, Verified ORF, "Cytoplasmic protein required
for cell viability, identified by association with
pre-ribosomal particles"
Length = 385
Score = 258 bits (660), Expect = 2e-73
Identities = 133/261 (50%), Positives = 177/261 (67%), Gaps = 11/261 (4%)
Query: 208 TVIIVIGMAGSGKTTYVGSLYNYLKVEQKKKVYTMNLDPAVKYVQYPLNIDIRDSIKYHE 267
+ II IGMAGSGKTT++ L ++L+ E K Y +NLDPAV V Y NIDIRDSIKY +
Sbjct: 4 STIICIGMAGSGKTTFMQRLNSHLRAE-KTPPYVINLDPAVLRVPYGANIDIRDSIKYKK 62
Query: 268 IMKEYKLGPNGAIMTCLNLFATRFDKVIEILEKRKSKLHYIIVDTPGQIEVFNWSASGNI 327
+M+ Y+LGPNGAI+T LNLF+T+ D+VI ++E++K K I+DTPGQIE F WSASG I
Sbjct: 63 VMENYQLGPNGAIVTSLNLFSTKIDQVIRLVEQKKDKFQNCIIDTPGQIECFVWSASGAI 122
Query: 328 ILETLSVSFPVVINYIIDTVRCERPITFMSNMLYACSVLYKSRLPFLACFNKTDIIKHDK 387
I E+ + SFP VI YI+DT R P TFMSNMLYACS+LYK++LP + FNKTD+ K D
Sbjct: 123 ITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVCKADF 182
Query: 388 CIEWMTNYDTFNDDVLNDE----------SYMASFSRSCALMINEFYEGIKTVGVSSKTN 437
EWMT++++F + D+ YM+S S +LM+ EFY + VGVSS T
Sbjct: 183 AKEWMTDFESFQAAIKEDQDLNGDNGLGSGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTG 242
Query: 438 EGFNNILKNLQILKEEYLNEY 458
+GF+ ++ + +EY Y
Sbjct: 243 DGFDEFMQCVDKKVDEYDQYY 263
Lambda K H
0.314 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 450
Number of extensions: 25
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 385
Length adjustment: 32
Effective length of query: 465
Effective length of database: 353
Effective search space: 164145
Effective search space used: 164145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.2 bits)
S2: 25 (14.2 bits)