>YOR207C RET1 SGDID:S000005733, Chr XV from 733458-730009, reverse
            complement, Verified ORF, "Second-largest subunit of RNA
            polymerase III, which is responsible for the
            transcription of tRNA and 5S RNA genes, and other low
            molecular weight RNAs"
          Length = 1149

 Score =  815 bits (2105), Expect = 0.0
 Identities = 428/815 (52%), Positives = 576/815 (70%), Gaps = 39/815 (4%)

Query: 227  KKIYENSKC---VNTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKII 283
            K +Y+  K    +NT  +KW LLPA+LKVKGLVKQH++S+NYF+  ++K I+ A  N++I
Sbjct: 26   KPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLI 83

Query: 284  KSDIDEHFYVEFLDITVGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGNSII 343
             SD+D  FY++++DI VG  S      +    P  CR RD+TYSAPIYVD+EY +G +II
Sbjct: 84   LSDVDPEFYLKYVDIRVGKKSSSSTK-DYLTPPHECRLRDMTYSAPIYVDIEYTRGRNII 142

Query: 344  TKNNVEIGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSK 403
               +VEIGR+P+MLRS+ C+L +  E ++ KL ECP DPGGYFIV GTE+V+L+QEQLSK
Sbjct: 143  MHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSK 202

Query: 404  NRIIVEMDIKHNIC-ATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGY 462
            NRIIVE D K  I  A++TS+T E KS+  ++ KN K+YLKHNS  E+I + I+L+A G 
Sbjct: 203  NRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGI 262

Query: 463  ESDQEIFQMI-GSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSM 521
             SD EI Q++ G+  +Y +   ++L E    +I T   AL YIG K++          +M
Sbjct: 263  LSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVK----------TM 312

Query: 522  KEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEID 581
            + +++     I++EG++ ++  +++H+  ++  DFR KA  I +M RRV+ +  N   ID
Sbjct: 313  RRQKLT----ILQEGIEAIATTVIAHLTVEA-LDFREKALYIAMMTRRVVMAMYNPKMID 367

Query: 582  DKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMN 641
            D+DY GNKRLELAGQLISLLFEDL+K+F    K  ID+ L K  ++     L S   + N
Sbjct: 368  DRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSN 427

Query: 642  DNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLN 701
            +             IT G+  AISTGNW++KRFKME++GV+ VLSRLS+I+ +GMMTR++
Sbjct: 428  N-------------ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRIS 474

Query: 702  SQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDXXXXXXXXXXX 761
            SQFEK RKVSGPRALQPSQ+G+LC  DTPEGE+CGLVKNLALMTH+T D           
Sbjct: 475  SQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLC- 533

Query: 762  YTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIY 821
            Y LGVED   +    ++    + V LNG L+G  + P KF+ + R+LRR GK+ +F+SIY
Sbjct: 534  YVLGVEDITLIDSASLHLN--YGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIY 591

Query: 822  DNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDV 881
             N    A++I+TDGGR+CRPLII+ +G+S++   H++ L +G ++F D LK  ++E++DV
Sbjct: 592  SNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDV 651

Query: 882  NEQNNLLIALNESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIG 941
            NE+N+  IAL E DI  S THLEI+P TILG VAGLIPYP+HNQSPRNTYQCAMGKQAIG
Sbjct: 652  NEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 711

Query: 942  AIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAI 1001
            AI YNQF R DTLLYL+ YPQ+P+VK+KTIE I+++KLPAGQNA VAVMS+ GYDIEDA+
Sbjct: 712  AIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDAL 771

Query: 1002 VMNKSSIDRGFGRCMSLRKHSVELKKYFNGSNDIV 1036
            V+NKSSIDRGFGRC + RK +  LK+Y N + DI+
Sbjct: 772  VLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDII 806

 Score =  385 bits (990), Expect = e-110
 Identities = 187/351 (53%), Positives = 253/351 (72%), Gaps = 4/351 (1%)

Query: 1104 KNISNESKDDIKKMA---NKD-IRKYHSLDMDGVASIGYLIKEGQLYVNKFSPKNIKDHV 1159
            K  +N ++D I  M    N D I ++ SL  DG+  +G  ++ GQ+Y+NK  P N  D  
Sbjct: 796  KRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAP 855

Query: 1160 KDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSR 1219
                      ++   + Y+   PS+ID+++ + +     L K+++RQ R PELGDKFSSR
Sbjct: 856  NPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSR 915

Query: 1220 HGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKY 1279
            HGQKGV G++V QEDMPF + GI PD+IMNPHGFPSRMTVGK++EL++ KA V++G  +Y
Sbjct: 916  HGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEY 975

Query: 1280 GSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKI 1339
            G+ F G+  E++++IL   GFN S K++LYSG+TGE L+ YIF GPIYYQKLKHMV DK+
Sbjct: 976  GTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKM 1035

Query: 1340 HARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYIC 1399
            HARARGPR +LTRQPTEGRS++GGLRLGEMERDC+IAYG S LLLERLM+SSD   V +C
Sbjct: 1036 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVC 1095

Query: 1400 EDCGMMGYDLYCTFCKKCDKNIVIQMPYACKLLFQELQTMNVFPKIIVKEV 1450
            + CG+MGY  +CT CK  +  I + +PYA KLLFQEL +MN+ P++ ++++
Sbjct: 1096 DKCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLEDI 1146

 Score = 22.3 bits (46), Expect = 0.29
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 19/126 (15%)

Query: 1097 KKDSYGHKNISNESKDDIKKMANKDIR----------KYHSLDMDGVASIGYLIKEGQLY 1146
            ++ ++ HK++ +E+ DD+ K   K  +          K+H L       +  L+K+    
Sbjct: 7    RRKTHIHKHVKDEAFDDLLKPVYKGKKLTDEINTAQDKWHLL--PAFLKVKGLVKQHLDS 64

Query: 1147 VNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIMRQ 1206
             N F   ++K  +K       N   ++++     Y  Y+D  +  ++S   K Y     +
Sbjct: 65   FNYFVDTDLKKIIK------ANQLILSDVD-PEFYLKYVDIRVGKKSSSSTKDYLTPPHE 117

Query: 1207 TRLPEL 1212
             RL ++
Sbjct: 118  CRLRDM 123

 Score = 22.3 bits (46), Expect = 0.29
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 36/114 (31%)

Query: 1139 LIKEGQLYVNKFSPKNIKDHVKDIGKVDINDF-KINEIKYKSVYPSYIDKIIFTENSEGL 1197
            ++ +GQ  V     + + D     G++D +DF K+  ++Y  V           EN   +
Sbjct: 614  IVSDGQSRVKDIHLRKLLD-----GELDFDDFLKLGLVEYLDVNE---------ENDSYI 659

Query: 1198 KLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPH 1251
             LY                     +K +V  + + E  PFT  G    LI  PH
Sbjct: 660  ALY---------------------EKDIVPSMTHLEIEPFTILGAVAGLIPYPH 692

 Score = 20.8 bits (42), Expect = 0.85
 Identities = 8/44 (18%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 181 DNINNLKEFIHNENKKPKTGKLYNNMNILNDEENFSGLVIKNKE 224
           DN   L + +  +N++P+ G  +++    + ++   G+++K ++
Sbjct: 890 DNDQALIKVLLRQNRRPELGDKFSSR---HGQKGVCGIIVKQED 930

Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3644
Number of extensions: 155
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 1450
Length of database: 1149
Length adjustment: 48
Effective length of query: 1402
Effective length of database: 1101
Effective search space:  1543602
Effective search space used:  1543602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.0 bits)
S2: 33 (17.3 bits)