>YDR116C MRPL1 SGDID:S000002523, Chr IV from 683577-682720, reverse
           complement, Verified ORF, "Mitochondrial ribosomal
           protein of the large subunit"
          Length = 285

 Score = 35.8 bits (81), Expect = 1e-06
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 163 ITFPHNLKKKREKKVYVVTN--AKLQKIASQSGADVVGEDDLINKIKEREIRLQKRNNNF 220
           +TFP   K  R  K+   TN  +KL+++  +    ++G  DL+ KIK  EI +   + + 
Sbjct: 117 VTFP---KPLRYIKIAAFTNDESKLEELREKYPNHLIGGADLVAKIKSGEISV---DFDK 170

Query: 221 LICTNDCIHKL-TRVGKEIGRKGLMPNEKCGTL 252
              T D +  L ++V + +G +G++P+ K GT+
Sbjct: 171 AFATPDIVPALQSQVARILGPRGVLPSVKKGTV 203

 Score = 15.0 bits (27), Expect = 2.4
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 319 VKTIYLSSTMGFPFKIKKNSL 339
           + ++   S    PF+ + NS+
Sbjct: 207 ISSLLQESLGSMPFRQRGNSI 227

Lambda     K      H
   0.316    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 132
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 285
Length adjustment: 27
Effective length of query: 312
Effective length of database: 258
Effective search space:    80496
Effective search space used:    80496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.0 bits)
S2: 22 (13.1 bits)