Query= PFL0560c Pf
Annotation|Plasmodium_falciparum_Stanford|(protein coding)
minichromosome maintenance protein, putative
(1024 letters)
>YBL023C MCM2 SGDID:S000000119, Chr II from 177529-174923, reverse
complement, Verified ORF, "Protein involved in DNA
replication; component of the Mcm2-7 hexameric complex
that binds chromatin as a part of the pre-replicative
complex"
Length = 868
Score = 153 bits (386), Expect = 6e-41
Identities = 123/431 (28%), Positives = 193/431 (44%), Gaps = 63/431 (14%)
Query: 513 NMYGDYINEENDFNRNVHYINSSDEENENYHEKNRDNNSLHLNKEIDSKVLEFIHDMEKV 572
N Y +N +N F I ++ + + N L + + + EF K+
Sbjct: 432 NNYDGNLNAKNGFPVFATIIEANSIKRREGNTANEGEEGLDVFSWTEEEEREF----RKI 487
Query: 573 GYNKFYL--LISSFCPRIIMNSYIKAXXXXXXXXXKTIYDDNNQIKRRGNIHNLLIGDPG 630
++ + +ISS P I + IK + N + RG+I+ LL+GDPG
Sbjct: 488 SRDRGIIDKIISSMAPSIYGHRDIKTAVACSLFGGVP-KNVNGKHSIRGDINVLLLGDPG 546
Query: 631 LGKSRILQYISNIMEKSLFICSTSTTINGLTACAVKDTTNNEYSLEGGALVLSDKGVCCI 690
KS+IL+Y+ +++F + GLTA KD E++LEGGALVL+DKGVC I
Sbjct: 547 TAKSQILKYVEKTAHRAVFATGQGASAVGLTASVRKDPITKEWTLEGGALVLADKGVCLI 606
Query: 691 DELDKISLNDQQSFLECMENQSINITKAGIVCNLKTRCTIIAASNPKEA----------- 739
DE DK++ D+ S E ME QSI+I+KAGIV L+ RC+IIAA+NP
Sbjct: 607 DEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLQARCSIIAAANPNGGRYNSTLPLAQN 666
Query: 740 ------------------DNISEEKDYHISNYLINPNKNKNDLSEDDHTQHTDFQSDDNS 781
D + EE D ++ +++ D H + +D
Sbjct: 667 VSLTEPILSRFDILCVVRDLVDEEADERLATFVV-----------DSHVRSHPENDEDRE 715
Query: 782 KEGSYNFSESDXXXXXXXXXXXXXXXXXXXXDYSPYIFSIKDALLYKCKQINEQNYLPLE 841
E N ES + + + + + L + K+ E + +P E
Sbjct: 716 GEELKNNGES--------------AIEQGEDEINEQLNARQRRLQRQRKKEEEISPIPQE 761
Query: 842 LIGVYIKYCRKYIFPKLSEDAKKYIRKFYLHLRNLANTHNDISVPITIRQLESLIRLCQA 901
L+ YI Y R I+PKL + + + Y LR + + S PIT+R LES++R+ ++
Sbjct: 762 LLMKYIHYARTKIYPKLHQMDMDKVSRVYADLRR--ESISTGSFPITVRHLESILRIAES 819
Query: 902 RARADLSHMVT 912
A+ LS V+
Sbjct: 820 FAKMRLSEFVS 830
Score = 31.2 bits (69), Expect = 3e-04
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 9/161 (5%)
Query: 157 NKVTIYLYNWNKVDKFESLKSEKVNQLICLRGSVLRVSPIQLLITNLNFVCDKCKCIIKV 216
+++ + + ++ + L+ ++ L+ + G V R + + + + F C KC I+
Sbjct: 291 SEIHVRISDFPTIYSLRELRESNLSSLVRVTGVVTRRTGVFPQLKYVKFNCLKCGSILGP 350
Query: 217 EFMDGKFEPPKKCMTNNCDGK-QFLPIRESAKSLEYQKIILKENRKIVNNIYETNDTNIK 275
F D E + NC K F E YQ++ L+E V +
Sbjct: 351 FFQDSN-EEIRISFCTNCKSKGPFRVNGEKTVYRNYQRVTLQEAPGTVPPGRLPRHREVI 409
Query: 276 NLTVTLEASKFFVNSCIPGNYVEALGILKVISFNNSHLING 316
L ++ SK PG VE GI K N + NG
Sbjct: 410 LLADLVDVSK-------PGEEVEVTGIYKNNYDGNLNAKNG 443
Score = 25.8 bits (55), Expect = 0.014
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 519 INEENDFNRNVHYINSSDEENE 540
+NE + RNV YI+ DEE E
Sbjct: 116 LNERDRLLRNVAYIDDEDEEQE 137
Score = 20.8 bits (42), Expect = 0.45
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 513 NMYGDYINEENDFNRNVHYINSSDEENENYHEKNRDNNSLH 553
NMY DY + N + ++ +++ + E+ R + L+
Sbjct: 77 NMYEDYAADHNRDRYDPDQVDDREQQELSLSERRRIDAQLN 117
Score = 17.3 bits (33), Expect = 4.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 871 LHLRNLANTHNDISVPIT 888
LH + A H++I V I+
Sbjct: 281 LHYPDYARIHSEIHVRIS 298
Score = 16.5 bits (31), Expect = 8.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 124 DEIDKFGNED 133
DE DK ++D
Sbjct: 607 DEFDKMNDQD 616
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1687
Number of extensions: 73
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 1024
Length of database: 868
Length adjustment: 44
Effective length of query: 980
Effective length of database: 824
Effective search space: 807520
Effective search space used: 807520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.1 bits)
S2: 31 (16.5 bits)