Query= PFL0665c Pf
Annotation|Plasmodium_falciparum_Stanford|(protein coding) RNA
polymerase subunit 8c, putative
(145 letters)
>YOR224C RPB8 SGDID:S000005750, Chr XV from 761266-760826, reverse
complement, Verified ORF, "RNA polymerase subunit
ABC14.5, common to RNA polymerases I, II, and III"
Length = 146
Score = 73.2 bits (178), Expect = 2e-18
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 12/145 (8%)
Query: 3 SNILFEDRFVISSVDNSKFEKVSRIKAKSTGYD-AELILDVHSELFKVEEKKAIYLALQD 61
SN LF+D F +S VD ++ KV RI+A ST D +L LD++ ELF V + ++ + +
Sbjct: 2 SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIAS 61
Query: 62 KL----LNRNDE---KGW---EQNENVPLNNIEYIMSGRIFKFEELSSERRTVYASFGGL 111
L ND + W + + ++ +Y+M G +KFEE+S + VY SFGGL
Sbjct: 62 SLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGL 121
Query: 112 MMALTTDKQFIGDLEIDMKIYLLTK 136
+M L + + + +L+ + YLL +
Sbjct: 122 LMRLEGNYRNLNNLKQE-NAYLLIR 145
Lambda K H
0.317 0.135 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 146
Length adjustment: 16
Effective length of query: 129
Effective length of database: 130
Effective search space: 16770
Effective search space used: 16770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 16 (10.2 bits)
S2: 16 (10.8 bits)