Query= PFL0665c Pf Annotation|Plasmodium_falciparum_Stanford|(protein coding) RNA polymerase subunit 8c, putative (145 letters)
>YOR224C RPB8 SGDID:S000005750, Chr XV from 761266-760826, reverse
           complement, Verified ORF, "RNA polymerase subunit
           ABC14.5, common to RNA polymerases I, II, and III"
          Length = 146

 Score = 73.2 bits (178), Expect = 2e-18
 Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 12/145 (8%)

Query: 3   SNILFEDRFVISSVDNSKFEKVSRIKAKSTGYD-AELILDVHSELFKVEEKKAIYLALQD 61
           SN LF+D F +S VD  ++ KV RI+A ST  D  +L LD++ ELF V  + ++ + +  
Sbjct: 2   SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIAS 61

Query: 62  KL----LNRNDE---KGW---EQNENVPLNNIEYIMSGRIFKFEELSSERRTVYASFGGL 111
            L       ND    + W   +  +    ++ +Y+M G  +KFEE+S +   VY SFGGL
Sbjct: 62  SLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGL 121

Query: 112 MMALTTDKQFIGDLEIDMKIYLLTK 136
           +M L  + + + +L+ +   YLL +
Sbjct: 122 LMRLEGNYRNLNNLKQE-NAYLLIR 145
Lambda     K      H
   0.317    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 146
Length adjustment: 16
Effective length of query: 129
Effective length of database: 130
Effective search space:    16770
Effective search space used:    16770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 16 (10.2 bits)
S2: 16 (10.8 bits)