>YER165W PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified
           ORF, "Poly(A) binding protein, part of the 3'-end
           RNA-processing complex, mediates interactions between
           the 5' cap structure and the 3' mRNA poly(A) tail,
           involved in control of poly(A) tail length, interacts
           with translation factor eIF-4G"
          Length = 577

 Score =  263 bits (672), Expect = 2e-74
 Identities = 134/263 (50%), Positives = 184/263 (69%), Gaps = 6/263 (2%)

Query: 3   ATGTNMMHPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYV 62
           ATG+       S+ASLYVGDL   V+EA LY+IF+ +G VSSIRVCRD++T+ SLGYAYV
Sbjct: 25  ATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYV 84

Query: 63  NYHNLADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFD 122
           N+++     +A++ LNYT IKG+  R+MWS RDPSLRK G+GNIF+KNL   IDNKAL+D
Sbjct: 85  NFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYD 144

Query: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKK 182
           TFS+FG+ILS K+ATDE GKSK +GFVH+E+E +AKEAI+ +NG+ L  + +YV P + +
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSR 204

Query: 183 SERAT--NDTK--FTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVK--MDNKNRKFCFI 236
            ER +   +TK  +TNLYVKN     T+   ++LF  +G I S  ++   D K + F F+
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFV 264

Query: 237 NYADAESAKNAMDNLNGKKITDD 259
           NY   E A  A++ LN  ++  +
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGE 287

 Score =  136 bits (343), Expect = 3e-36
 Identities = 65/124 (52%), Positives = 91/124 (73%)

Query: 417 LYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTI 476
           LYVG  Q +  R  +LK +++   +E   K+QGVNL++KNLDD +DD  L E F P+GTI
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI 348

Query: 477 TSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 536
           TSAKVMR E  +SKGFGFVCF++ EEA KA+TE + +I+ GKPLYV +A++++ R S+L 
Sbjct: 349 TSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLA 408

Query: 537 QRFR 540
           Q+ +
Sbjct: 409 QQIQ 412

 Score =  122 bits (307), Expect = 5e-32
 Identities = 80/260 (30%), Positives = 134/260 (51%), Gaps = 23/260 (8%)

Query: 15  TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
           + ++++ +L+ D+    LY+ F+  G + S ++  D    KS G+ +V++     A+ A+
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183

Query: 75  DTLNYTNIKGQPA----RLMWSHRDPSLR--KSGTGNIFVKNLDKSIDNKALFDTFSMFG 128
           D LN   + GQ       L    RD  L   K+   N++VKN++    ++   + F+ FG
Sbjct: 184 DALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFG 243

Query: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSE---- 184
            I+S  +  D  GK K +GFV+YE  E A +A+E +N  +L  + +YVG   KK+E    
Sbjct: 244 PIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHV 303

Query: 185 --------RATNDTKF--TNLYVKNFPDSVTETHLRQLFNPYGEITS-MIVKMDN-KNRK 232
                   R     K+   NL+VKN  DSV +  L + F PYG ITS  +++ +N K++ 
Sbjct: 304 LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKG 363

Query: 233 FCFINYADAESAKNAMDNLN 252
           F F+ ++  E A  A+   N
Sbjct: 364 FGFVCFSTPEEATKAITEKN 383

 Score = 87.4 bits (215), Expect = 2e-21
 Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 17/185 (9%)

Query: 17  SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
           +LYV ++N + T+    E+F   G + S  + +D+   K  G+ +VNY    DA +A++ 
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEA 278

Query: 77  LNYTNIKGQPA----------------RLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKAL 120
           LN + + G+                  +   ++R   + K    N+FVKNLD S+D++ L
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 338

Query: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
            + F+ +G I S KV   E GKSK +GFV +   E A +AI + N   +  K +YV    
Sbjct: 339 EEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398

Query: 181 KKSER 185
           +K  R
Sbjct: 399 RKDVR 403

 Score = 83.6 bits (205), Expect = 3e-20
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 17/148 (11%)

Query: 402 KDETAASDCADTPN-------ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYI 454
           ++E AA +  D  N        +YV PH SR  R + L+          + K    NLY+
Sbjct: 174 EEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE----------ETKAHYTNLYV 223

Query: 455 KNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKI 514
           KN++    D   +ELF  FG I SA + +D   + KGFGFV +   E+A KAV  ++   
Sbjct: 224 KNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSE 283

Query: 515 INGKPLYVGLAEKREQRLSRLQQRFRMH 542
           +NG+ LYVG A+K+ +R+  L++++  +
Sbjct: 284 LNGEKLYVGRAQKKNERMHVLKKQYEAY 311

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 34/87 (39%), Positives = 55/87 (63%)

Query: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
           N++IKNL   ID+  L + F  FG I S+K+  DE  +SKGFGFV F  +  A +A+  +
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186

Query: 511 HLKIINGKPLYVGLAEKREQRLSRLQQ 537
           +  ++NG+ +YV     R++R S+L++
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEE 213

 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 13/97 (13%)

Query: 435 KFDNLNVENKNK------------HQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVM 482
           + +NLN+++  K            +   +LY+ +L+  + +  L ++F P G+++S +V 
Sbjct: 11  QLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVC 70

Query: 483 RDE-KEQSKGFGFVCFASQEEANKAVTEMHLKIINGK 518
           RD   + S G+ +V F   E   KA+ +++   I G+
Sbjct: 71  RDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGR 107

 Score = 28.9 bits (63), Expect = 0.001
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 815 QKQVLGENLFPLVA--NYHPTLAGKITGMMLEM 845
           Q+Q LGE L+  V+    +   AGKITGM+L++
Sbjct: 505 QRQALGEQLYKKVSAKTSNEEAAGKITGMILDL 537

Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 983
Number of extensions: 52
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 875
Length of database: 577
Length adjustment: 39
Effective length of query: 836
Effective length of database: 538
Effective search space:   449768
Effective search space used:   449768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.2 bits)
S2: 29 (15.8 bits)