>YLR222C UTP13 SGDID:S000004212, Chr XII from 581773-579320, reverse
           complement, Verified ORF, "Nucleolar protein, component
           of the small subunit (SSU) processome containing the U3
           snoRNA that is involved in processing of pre-18S rRNA"
          Length = 817

 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 35/226 (15%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   EQNKIML--VYDNHDVLLVNLDNERCESKFENSIKDDEKKICMLNNGNFLILNANKKMIY 59
           E  KI+   V D  +++ +   + +   K  N  + +   + +  +G +L   +  +++ 
Sbjct: 27  ENGKILATPVLDEINIIDLTPGSRKILHKISNEDEQEITALKLTPDGQYLTYVSQAQLLK 86

Query: 60  QYIYNKSTAIYTKYVRAHLNVIKLTTNERIIFGGDKIGNVYIWSAISGFLINTFQAHFGP 119
            +       + +  + +   ++   +   ++  G   G++ +    +G++ ++F+ H G 
Sbjct: 87  IFHLKTGKVVRSMKISSPSYILDADSTSTLLAVGGTDGSIIVVDIENGYITHSFKGHGGT 146

Query: 120 IKDI-LIDQLVNVLYTYSDDNIVHVYNLHDLFRKKKIQPMLFYQHXXXXXXXXXXXXTPN 178
           I  +    QL + ++  +  +   +  + DL ++K +  +   Q              P+
Sbjct: 147 ISSLKFYGQLNSKIWLLASGDTNGMVKVWDLVKRKCLHTL---QEHTSAVRGLDIIEVPD 203

Query: 179 IYDTLYTLISLTNDGTIYVWGLKSKEAVHILKT-----QTECCTYI 219
             +    L+S   D  I +W    K+   +LKT     Q E C ++
Sbjct: 204 NDEPSLNLLSGGRDDIINLWDFNMKKKCKLLKTLPVNQQVESCGFL 249

 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 386 TFIGHKSQVLKCYVDDKKQILISLASDG-IKIWDIYNCYAIKTLKYGENVINFYIPTFKN 444
           T  GH + V +C   +K++ LIS  +DG IKIWD  +   +KTL  G N   + + T  +
Sbjct: 570 TLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTLD-GHNNRLWALSTMND 628

Query: 445 VSYLI--ELPNLVLEYEDNTNIHIIDEVNEHTFQSNYKNLLYN 485
              ++  +   +   ++D T   I +E  +   Q   +  L N
Sbjct: 629 GDMIVSADADGVFQFWKDCTEQEIEEEQEKAKLQVEQEQSLQN 671

 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 23/173 (13%)

Query: 48  FLILNANKKMIYQYIYNKSTAIY-------TKYVR-AH---LNVIKLTTNERIIFGGDKI 96
           FL+  +N   I ++I  K TA         ++Y R AH   +N + ++ N+ I       
Sbjct: 453 FLLTASNDLTIKKWIIPKPTASMDVQIIKVSEYTRHAHEKDINALSVSPNDSIFATASYD 512

Query: 97  GNVYIWSAISGFLINTFQAHFGPIKDILIDQLVNVLYTYSDDNIVHVYNLHDLFRKKKIQ 156
               IW+  +G L  T   H   + D+   Q   +L T S D  V +++L      K ++
Sbjct: 513 KTCKIWNLENGELEATLANHKRGLWDVSFCQYDKLLATSSGDKTVKIWSLDTFSVMKTLE 572

Query: 157 PMLFYQHXXXXXXXXXXXXTPNIYDTLYTLISLTNDGTIYVWGLKSKEAVHIL 209
                                +  +    LIS   DG I +W   S E +  L
Sbjct: 573 ------------GHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTL 613

 Score = 23.5 bits (49), Expect = 0.031
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 361 LETNKIIKSQNVVTNEMFLNLKDFTTFIGHKSQVLKCYVDDKKQILISLASDGIKIWDIY 420
           L+T  ++K     T E   N     +FI  + Q++ C  D   +I    + + +K  D +
Sbjct: 562 LDTFSVMK-----TLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTLDGH 616

Query: 421 N--CYAIKTLKYGENVIN 436
           N   +A+ T+  G+ +++
Sbjct: 617 NNRLWALSTMNDGDMIVS 634

 Score = 23.1 bits (48), Expect = 0.040
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 29/103 (28%)

Query: 356 INYLHLETNKIIKSQNVVTNEMFLNLKDFTT------------------------FIGHK 391
           +   HL+T K+++S  + +    L+    +T                        F GH 
Sbjct: 85  LKIFHLKTGKVVRSMKISSPSYILDADSTSTLLAVGGTDGSIIVVDIENGYITHSFKGHG 144

Query: 392 SQV--LKCY--VDDKKQILISLASDG-IKIWDIYNCYAIKTLK 429
             +  LK Y  ++ K  +L S  ++G +K+WD+     + TL+
Sbjct: 145 GTISSLKFYGQLNSKIWLLASGDTNGMVKVWDLVKRKCLHTLQ 187

 Score = 20.0 bits (40), Expect = 0.34
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 386 TFIGHKS---QVLKCYVDDKKQILISLASDGIKIWDIYNCYAIKTLKYGENVI 435
           T   HK     V  C  D  K +  S     +KIW +     +KTL+   N +
Sbjct: 528 TLANHKRGLWDVSFCQYD--KLLATSSGDKTVKIWSLDTFSVMKTLEGHTNAV 578

 Score = 18.5 bits (36), Expect = 0.99
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 27/136 (19%)

Query: 112 TFQAHFGPIKDILIDQLVNVLYTYSDDNIVHVYNLHD-------LFRKKKIQPMLFYQHX 164
           T  AH   I  + +    ++  T S D    ++NL +          K+ +  + F Q  
Sbjct: 486 TRHAHEKDINALSVSPNDSIFATASYDKTCKIWNLENGELEATLANHKRGLWDVSFCQ-- 543

Query: 165 XXXXXXXXXXXTPNIYDTLYTLISLTNDGTIYVWGLKSKEAVHILKTQTECCTYICSNYP 224
                          YD L  L + + D T+ +W L +   +  L+  T      CS   
Sbjct: 544 ---------------YDKL--LATSSGDKTVKIWSLDTFSVMKTLEGHTN-AVQRCSFIN 585

Query: 225 FNTHLYVCKKNKIIRI 240
               L  C  + +I+I
Sbjct: 586 KQKQLISCGADGLIKI 601

 Score = 17.7 bits (34), Expect = 1.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 72  KYVRAHLNVIKLTTN 86
           +YV   LN + L TN
Sbjct: 344 RYVGPELNKLALATN 358

Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 827
Number of extensions: 46
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 502
Length of database: 817
Length adjustment: 38
Effective length of query: 464
Effective length of database: 779
Effective search space:   361456
Effective search space used:   361456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)