Query= PFL2010c Pf Annotation|Plasmodium_falciparum_Stanford|(protein coding) DEAD/DEAH box helicase, putative (894 letters)
>YLR276C DBP9 SGDID:S000004266, Chr XII from 696832-695048, reverse
           complement, Verified ORF, "ATP-dependent RNA helicase of
           the DEAD-box family involved in biogenesis of the 60S
           ribosomal subunit"
          Length = 594

 Score =  112 bits (280), Expect = 7e-29
 Identities = 99/354 (27%), Positives = 156/354 (44%), Gaps = 53/354 (14%)

Query: 113 FDNIMLDVRLRKALLYLFKYQHPTIIQKMSICKILNG-HDVIISSKTGSGKTMAYLIPVV 171
           F+   LD RL +A+  +  +Q+PT+IQ  +I   L    D+I  + TGSGKT+AYLIPV+
Sbjct: 19  FEAFHLDSRLLQAIKNI-GFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVI 77

Query: 172 HNLIKFNLNEKDHLKFFYKCIIICPTEELCLQIYDVTKKLCTYL-KDIITVNHN------ 224
             ++++     +  +     II+ PT EL  Q+Y+V +KL  Y  KDI T+N +      
Sbjct: 78  ETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDS 137

Query: 225 -VNNTFYEHPTILISTPKDLCTHIIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLK 283
            ++    + P I++ TP  L   +   + K N   L  LK L++DE D++ T  +Q  L 
Sbjct: 138 VLSTLLMDQPEIIVGTPGKLLDLL---QTKINSISLNELKFLVVDEVDLVLTFGYQDDLN 194

Query: 284 TLTSYLPKKFNKKYQIVMASATLKRNILEKTKLFLHNPIYVSHEQXXXXXXXXXXXXXXX 343
            +  YLP K  K  Q  + SATL  +I    + F  +P                      
Sbjct: 195 KIGEYLPLK--KNLQTFLMSATLNDDIQALKQKFCRSP---------------------- 230

Query: 344 XXXVIMKREEAGKNNIHDEGNEGKTKYQKFTGKAFYYVYKEEXXXXXXXXXXXXXXXXXX 403
               I+K  +       +E N+ + K  +      YYV   E                  
Sbjct: 231 ---AILKFND-------EEINKNQNKLLQ------YYVKVSEFDKFLLCYVIFKLNLIKG 274

Query: 404 XXXXFTTTIHDAYKIKIFLTYLNVSSSILNPNHPILIRQNIISAFNNSKFHFLI 457
               F   I   Y++K+ +    + S ILN   P+  RQ+I+  FN + +  LI
Sbjct: 275 KTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLI 328

 Score = 75.1 bits (183), Expect = 1e-17
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 15/142 (10%)

Query: 584 LNEEKDFLYSRGLDFYDVKCVVNFDMPSDSETFIHRIGRTCRLNNKGKCISFV---NELN 640
           + ++K++  SRG+DF +V CV+NFD+P+ +++++HR+GRT R    G  ISFV    E  
Sbjct: 375 VKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKEFG 434

Query: 641 YGEKEFLQKLIEDKNICTMIKK------------NIQYNIVEKYRYRVESTLNKCTNKKI 688
             +   LQ   +D+ I + I K                  VE +RYR+E      T   I
Sbjct: 435 KHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYKFDQKQVEAFRYRMEDGFRAVTQVAI 494

Query: 689 KLFIQKEILYQSLKSKELKDFF 710
           +    KE+  + L S++LK  F
Sbjct: 495 REARVKELKQELLASEKLKRHF 516

 Score = 20.4 bits (41), Expect = 0.34
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 629 KGKCISFVNELNYGEKEFLQKLIEDKNICTMIKK-----NIQYNIVEKYRYRVESTL 680
           KGK + FVN ++ G +  L+ ++E   I + I       N + +IV+++   V   L
Sbjct: 273 KGKTLIFVNNIDRGYR--LKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLL 327

 Score = 18.1 bits (35), Expect = 1.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 273 LHTQEFQSYLKTLTSYL 289
           LH    Q +LK +  YL
Sbjct: 532 LHPARVQQHLKRVPDYL 548

 Score = 17.3 bits (33), Expect = 2.9
 Identities = 5/15 (33%), Positives = 10/15 (66%)

Query: 603 CVVNFDMPSDSETFI 617
           C++N ++P +S   I
Sbjct: 301 CILNSELPVNSRQHI 315

 Score = 16.2 bits (30), Expect = 6.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 794 LTKEPEREVADPSKLPPLCGQRLRN 818
           L  +PE  V  P KL  L   ++ +
Sbjct: 143 LMDQPEIIVGTPGKLLDLLQTKINS 167
Lambda     K      H
   0.322    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 911
Number of extensions: 52
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 894
Length of database: 594
Length adjustment: 40
Effective length of query: 854
Effective length of database: 554
Effective search space:   473116
Effective search space used:   473116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)