Query= PFL2010c Pf
Annotation|Plasmodium_falciparum_Stanford|(protein coding) DEAD/DEAH
box helicase, putative
(894 letters)
>YLR276C DBP9 SGDID:S000004266, Chr XII from 696832-695048, reverse
complement, Verified ORF, "ATP-dependent RNA helicase of
the DEAD-box family involved in biogenesis of the 60S
ribosomal subunit"
Length = 594
Score = 112 bits (280), Expect = 7e-29
Identities = 99/354 (27%), Positives = 156/354 (44%), Gaps = 53/354 (14%)
Query: 113 FDNIMLDVRLRKALLYLFKYQHPTIIQKMSICKILNG-HDVIISSKTGSGKTMAYLIPVV 171
F+ LD RL +A+ + +Q+PT+IQ +I L D+I + TGSGKT+AYLIPV+
Sbjct: 19 FEAFHLDSRLLQAIKNI-GFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVI 77
Query: 172 HNLIKFNLNEKDHLKFFYKCIIICPTEELCLQIYDVTKKLCTYL-KDIITVNHN------ 224
++++ + + II+ PT EL Q+Y+V +KL Y KDI T+N +
Sbjct: 78 ETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDS 137
Query: 225 -VNNTFYEHPTILISTPKDLCTHIIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLK 283
++ + P I++ TP L + + K N L LK L++DE D++ T +Q L
Sbjct: 138 VLSTLLMDQPEIIVGTPGKLLDLL---QTKINSISLNELKFLVVDEVDLVLTFGYQDDLN 194
Query: 284 TLTSYLPKKFNKKYQIVMASATLKRNILEKTKLFLHNPIYVSHEQXXXXXXXXXXXXXXX 343
+ YLP K K Q + SATL +I + F +P
Sbjct: 195 KIGEYLPLK--KNLQTFLMSATLNDDIQALKQKFCRSP---------------------- 230
Query: 344 XXXVIMKREEAGKNNIHDEGNEGKTKYQKFTGKAFYYVYKEEXXXXXXXXXXXXXXXXXX 403
I+K + +E N+ + K + YYV E
Sbjct: 231 ---AILKFND-------EEINKNQNKLLQ------YYVKVSEFDKFLLCYVIFKLNLIKG 274
Query: 404 XXXXFTTTIHDAYKIKIFLTYLNVSSSILNPNHPILIRQNIISAFNNSKFHFLI 457
F I Y++K+ + + S ILN P+ RQ+I+ FN + + LI
Sbjct: 275 KTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLI 328
Score = 75.1 bits (183), Expect = 1e-17
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 584 LNEEKDFLYSRGLDFYDVKCVVNFDMPSDSETFIHRIGRTCRLNNKGKCISFV---NELN 640
+ ++K++ SRG+DF +V CV+NFD+P+ +++++HR+GRT R G ISFV E
Sbjct: 375 VKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKEFG 434
Query: 641 YGEKEFLQKLIEDKNICTMIKK------------NIQYNIVEKYRYRVESTLNKCTNKKI 688
+ LQ +D+ I + I K VE +RYR+E T I
Sbjct: 435 KHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYKFDQKQVEAFRYRMEDGFRAVTQVAI 494
Query: 689 KLFIQKEILYQSLKSKELKDFF 710
+ KE+ + L S++LK F
Sbjct: 495 REARVKELKQELLASEKLKRHF 516
Score = 20.4 bits (41), Expect = 0.34
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 629 KGKCISFVNELNYGEKEFLQKLIEDKNICTMIKK-----NIQYNIVEKYRYRVESTL 680
KGK + FVN ++ G + L+ ++E I + I N + +IV+++ V L
Sbjct: 273 KGKTLIFVNNIDRGYR--LKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLL 327
Score = 18.1 bits (35), Expect = 1.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 273 LHTQEFQSYLKTLTSYL 289
LH Q +LK + YL
Sbjct: 532 LHPARVQQHLKRVPDYL 548
Score = 17.3 bits (33), Expect = 2.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 603 CVVNFDMPSDSETFI 617
C++N ++P +S I
Sbjct: 301 CILNSELPVNSRQHI 315
Score = 16.2 bits (30), Expect = 6.4
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 794 LTKEPEREVADPSKLPPLCGQRLRN 818
L +PE V P KL L ++ +
Sbjct: 143 LMDQPEIIVGTPGKLLDLLQTKINS 167
Lambda K H
0.322 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 911
Number of extensions: 52
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 894
Length of database: 594
Length adjustment: 40
Effective length of query: 854
Effective length of database: 554
Effective search space: 473116
Effective search space used: 473116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)