Query= PFL2055w Pf
Annotation|Plasmodium_falciparum_Stanford|(protein coding) 40S
ribosomal protein S17, putative
(137 letters)
>YDR447C RPS17B SGDID:S000002855, Chr IV from
1355544-1355542,1355227-1354820, reverse complement,
Verified ORF, "Ribosomal protein 51 (rp51) of the small
(40s) subunit; nearly identical to Rps17Ap and has
similarity to rat S17 ribosomal protein"
Length = 136
Score = 134 bits (338), Expect = 4e-37
Identities = 70/136 (51%), Positives = 96/136 (70%), Gaps = 9/136 (6%)
Query: 1 MGRVRTKTIKRAARQIVEKYYAKLTLDFQINKKITEEVAIIPSKRMKNKVAGFVTHLMKR 60
MGRVRTKT+KRA++ ++E+YY KLTLDFQ NK++ +E+A I SKR++NK+AG+ THLMKR
Sbjct: 1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKR 60
Query: 61 IQKGPVRGISLKLQXXXXXXXLDFVPEKSQIDVS----VIYVEPDTLRMIKSLGINISNM 116
IQKGPVRGIS KLQ +VPE S +D+S V+ V+ T ++KSLG +
Sbjct: 61 IQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLG-----L 115
Query: 117 KVHNPMINTNQQKQNR 132
K+ +IN + Q+ R
Sbjct: 116 KLPLSVINVSAQRDRR 131
Lambda K H
0.320 0.134 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 136
Length adjustment: 15
Effective length of query: 122
Effective length of database: 121
Effective search space: 14762
Effective search space used: 14762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 16 (10.3 bits)
S2: 16 (10.8 bits)