>YGL236C MTO1 SGDID:S000003205, Chr VII from 55796-53787, reverse
           complement, Verified ORF, "Mitochondrial protein, forms
           a heterodimer complex with Mss1p that performs the
           5-carboxymethylaminomethyl modification of the wobble
           uridine base in mitochondrial tRNAs; required for
           respiration in paromomycin-resistant 15S rRNA mutants"
          Length = 669

 Score =  262 bits (670), Expect = 5e-74
 Identities = 148/315 (46%), Positives = 193/315 (61%), Gaps = 27/315 (8%)

Query: 350 ESSTKNIAQQLR-ENNFEIKRMKTGTPPRLDINSINFHVLEREDTEKDYPFYFSFLNMN- 407
           E  T  I+  L+ E  F++ R+KTGTP RL   SI+F  LE +  +   P   SFLN   
Sbjct: 215 EQPTYGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDA-LPVPMSFLNETV 273

Query: 408 KINNNKTLPCYKTYTNLKTHELVRNNLAQLPDYDSFDKFGNGPRYCPSIAKKVMKFSEKK 467
            +   K L C+ T+T  + H+ +RNNL Q       D    GPRYCPSI  K+++F ++ 
Sbjct: 274 SVEPTKQLDCFGTHTTPQMHDFLRNNLHQSIHIQ--DTTIKGPRYCPSIEAKILRFPDRS 331

Query: 468 KHIIWIEPEGFNNKLIYPNGLSSAYPIHIQKDIINSIKGLENAQIVFPAYDVEYYYVNPK 527
            H IW+EPEGFN+ +IYPNG+S++ P  +Q  ++  I G+ N +I+ PAY VEY YV+P+
Sbjct: 332 SHKIWLEPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPR 391

Query: 528 CLNYTLETKNVKGLFLAGQICGTTGYEEAACQGIVAGINAALXXXXXXXXXXXXXXXXXX 587
            L  +LETK V GLFLAGQI GTTGYEEAA QGI+AGINA L                  
Sbjct: 392 QLKPSLETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGL------------------ 433

Query: 588 XXXXXXXXXXXXFILKRNESYIGVLIHDLINKGITEPYRMFTSRAEYRLFLRPDNCDIRL 647
                        +LKR+E+YIGVLI DLIN G+ EPYRMFTSR+E+R+ +R DN D RL
Sbjct: 434 ----LSRQEREQLVLKRSEAYIGVLIDDLINNGVIEPYRMFTSRSEFRISVRADNADFRL 489

Query: 648 TPKANQLGIVSKERI 662
           TP   QLGI+S  R+
Sbjct: 490 TPIGAQLGIISPVRL 504

 Score =  149 bits (376), Expect = 6e-40
 Identities = 85/190 (44%), Positives = 110/190 (57%), Gaps = 18/190 (9%)

Query: 91  VIVIGGGHSGCEASYISAKSNAMTLLVTQNKETIGEMSCNPSIGGIGKGILVKEIDALGG 150
           V+VIG GH+GCEA+  S+++ A T L+T +   IG+ SCNPSIGG+GKGILVKEIDAL G
Sbjct: 39  VVVIGAGHAGCEAAAASSRTGAHTTLITPSLTDIGKCSCNPSIGGVGKGILVKEIDALDG 98

Query: 151 LMGKVIDKSGIHFKILNMKKGLAVRGHRAQADRDLYNYYMKEYLYNT---PNLDILENSV 207
           LMGKV D +G+ FK+LN  KG AV G RAQ DR+LY  YM+  L +    PNL +L+N V
Sbjct: 99  LMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLSLLQNKV 158

Query: 208 QSLLIDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSCEIYSHNVILTTGTFLGGICHI 267
             L++                                  ++ +  VI+TTGTFL    HI
Sbjct: 159 ADLIL---------------YDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHI 203

Query: 268 GKDKYIGGRI 277
           G  +   GRI
Sbjct: 204 GDKRIAAGRI 213

 Score = 47.4 bits (111), Expect = 3e-09
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 888 KYSSYLKKQFQEIRKINDNFDLVIPRDLKYDRNNFPYLSNEEIEKLNKFKPQTLFEANKI 947
           KY  Y+ KQ Q ++    + ++++P+D  YD    P LS E    LN+ +P T+ +A +I
Sbjct: 589 KYEPYIVKQNQFVKAFQADENMLLPQD--YDYRQLPTLSTECKLLLNRVQPLTIGQARRI 646

Query: 948 EGVTMSAVNYLY 959
           +G+T +A+  LY
Sbjct: 647 QGITAAALFELY 658

 Score = 18.1 bits (35), Expect = 2.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 269 KDKYIGGRIKRLINNFDLKMKK 290
           +DK++     R + NF L  +K
Sbjct: 509 RDKHLYDETIRALQNFKLSSQK 530

 Score = 17.7 bits (34), Expect = 2.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 270 DKYIGGRIKRLINN 283
           + YIG  I  LINN
Sbjct: 448 EAYIGVLIDDLINN 461

Lambda     K      H
   0.317    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1205
Number of extensions: 53
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 972
Length of database: 669
Length adjustment: 41
Effective length of query: 931
Effective length of database: 628
Effective search space:   584668
Effective search space used:   584668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)