>YPL122C TFB2 SGDID:S000006043, Chr XVI from 320766-319225, reverse
           complement, Verified ORF, "Subunit of TFIIH and
           nucleotide excision repair factor 3 complexes, involved
           in transcription initiation, required for nucleotide
           excision repair, similar to 52 kDa subunit of human
           TFIIH"
          Length = 513

 Score = 82.4 bits (202), Expect = 7e-20
 Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 29/192 (15%)

Query: 726 KNKDEKSLILDKRKNITKKLINDSLYSDIKMNGSNNLEI---GLIVQSNFKVYLYTSSLL 782
           +N++E S+  D     +   I  S   D+   G  N +I    LIV++NFK+Y Y++S L
Sbjct: 298 QNREEPSVNEDGANGKSTTDITTS--DDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPL 355

Query: 783 KINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIKFLESYSHPGKNNFKSS- 841
           +I +LS    L+AR  NMV+G +TR S+  A  + ITA+QII +LE+++HP         
Sbjct: 356 QIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEK 415

Query: 842 -----------------IPMNVITQLKLWESERHRLTLEDAIVFKSFEKDFMPHLYQQ-- 882
                            +P  V+ Q++LW+ E  R+   +  ++  FE     +L  +  
Sbjct: 416 LEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYA 475

Query: 883 ----IVIWANSK 890
               +++W + K
Sbjct: 476 QDIGVLLWKDDK 487

 Score = 38.9 bits (89), Expect = 8e-07
 Identities = 17/55 (30%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 463 PSESVIEVLRRKNFLLDDPNNTKTINMSREAFSWFLKDLRSRIISLVLEYLLIID 517
           PSE V+ +L+    L+++ N+T    ++ E F + L+++ S++ +L+L+YL +I+
Sbjct: 159 PSEKVLNLLKHSK-LMEEVNSTGEFKITNEGFQFLLQEINSQLWTLLLQYLKMIE 212

 Score = 33.5 bits (75), Expect = 4e-05
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 16  YMKELNENVWCYFFDDSLAHETIYHSLNELEQIIISRLLFIQQVVSERAMRLWINPNYLK 75
           Y++E+ + V    +        IY  L  L +  I  ++F +  V    +  W+N N   
Sbjct: 13  YLEEIPQQVQNRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKL 72

Query: 76  KLSESIKNLVEAKILVESDMKKDNYNQYKINENFRITLLXXXXXXXXXXXXXXXXXXXEQ 135
           +   +IK++    +L+ +  K        +N  F+I+L                      
Sbjct: 73  QFQNAIKSMKSLHLLIPN--KSSGTLMINLNPTFKISLRNALTGGEVQNSFGVVV----- 125

Query: 136 LEREKNLYEQNLFPHKEEIFGYAQTKWNNLLHFI 169
              E+N+   +L         Y+  KW  +LHF+
Sbjct: 126 ---EENVVSLDLLDE------YSANKWETILHFM 150

 Score = 18.1 bits (35), Expect = 1.5
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 21/102 (20%)

Query: 2   VKIRKNVENMELYDYMKELNENVW---CYFFDDS-------------LAHETIYHSLNEL 45
           V + +NV +++L D   E + N W    +F   +             L H  +   +N  
Sbjct: 123 VVVEENVVSLDLLD---EYSANKWETILHFMVGTPLAKIPSEKVLNLLKHSKLMEEVNST 179

Query: 46  EQIIISRLLFIQQVVSERAMRLW-INPNYLKKLSESIKNLVE 86
            +  I+   F Q ++ E   +LW +   YLK +  S  +LV+
Sbjct: 180 GEFKITNEGF-QFLLQEINSQLWTLLLQYLKMIETSKMDLVD 220

 Score = 15.8 bits (29), Expect = 7.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 676 YLSLLSNITIEGLCEEDVRKRL 697
           YL   ++  +  L EE + K+L
Sbjct: 399 YLETHAHPQMRRLAEEKLEKKL 420

Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 807
Number of extensions: 29
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 945
Length of database: 513
Length adjustment: 39
Effective length of query: 906
Effective length of database: 474
Effective search space:   429444
Effective search space used:   429444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)