>YGL048C RPT6 SGDID:S000003016, Chr VII from 411289-410072, reverse
           complement, Verified ORF, "One of six ATPases of the 19S
           regulatory particle of the 26S proteasome involved in
           the degradation of ubiquitinated substrates; bound by
           ubiquitin-protein ligases Ubr1p and Ufd4p; localized
           mainly to the nucleus throughout the cell cycle"
          Length = 405

 Score =  563 bits (1451), Expect = e-165
 Identities = 282/393 (71%), Positives = 332/393 (84%), Gaps = 1/393 (0%)

Query: 44  EQVQSGIKRYYELKIEEYESIINKKLQNKKRLEAQRNELNARVRELCDEIQYLLEAASYV 103
           E  +SGIK Y+E KI+E E  I  K +N +RLEAQRN LN +VR + DE++ L E  SYV
Sbjct: 13  ETHESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYV 72

Query: 104 GEIVKPMGKNKVLVKINPEGKYVVDIARHINISHCTPNTRVALYNDSYKLHKILPSKVDP 163
           GE++K +   KVLVK+ PEGKY+VD+A+ IN+     + RV L +DSY LHK+L +K DP
Sbjct: 73  GEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADP 132

Query: 164 LVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPG 223
           LVSLM VEKVPDSTY+MVGGL +Q+KE+KEVIELPVKHPE+FESLGI+QPKGV+LYGPPG
Sbjct: 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPG 192

Query: 224 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 283
           TGKTLLARAVAHHTDC FIRVSG+ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252

Query: 284 IGSQRIEGE-HGDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEALLRPGRIDR 342
           IGS R+EG   GDSEVQRTM+ELLNQLDGFE+++NIK+IM TNR+DILD ALLRPGRIDR
Sbjct: 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDR 312

Query: 343 KIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIATDMNNCSGAEVKAVCTEAGMFALRE 402
           KIEFP P+V AR EIL+IHSRKMNL RGI++ K+A  MN CSGA+VK VCTEAGM+ALRE
Sbjct: 313 KIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372

Query: 403 RRVHVTQEDFEMAVAKVMKQDAEKNFTLRKLWK 435
           RR+HVTQEDFE+AV KVM ++ E   ++ KL+K
Sbjct: 373 RRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405

Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 550
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 405
Length adjustment: 32
Effective length of query: 403
Effective length of database: 373
Effective search space:   150319
Effective search space used:   150319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.4 bits)
S2: 25 (14.2 bits)