>YJL053W PEP8 SGDID:S000003589, Chr X from 335815-336954, Verified
           ORF, "Vacuolar protein sorting protein that forms part
           of the multimeric membrane-associated retromer complex
           along with Vps35p, Vps29p, Vps17p, and Vps5p; essential
           for endosome-to-Golgi retrograde protein transport"
          Length = 379

 Score =  187 bits (475), Expect = 3e-52
 Identities = 126/381 (33%), Positives = 189/381 (49%), Gaps = 89/381 (23%)

Query: 2   LSTIFGSVCSIDLKIDADDNKKFAFLRKDKKG-------EKCPIFSDGEDINGTATISLK 54
           +S  F     I++  D ++++K   +             E  P++ DGE + G  T+ ++
Sbjct: 1   MSIFFKPPIDIEILFDNEESRKHVDIATRSSNSSYKSMKESLPVYEDGESLGGIVTLRVR 60

Query: 55  PGKKFEHYGIKLELIGQINILND--------------------------KANSYD-FFSI 87
             KK +H GIK+ +IG I++L                            + NS D F   
Sbjct: 61  DSKKVDHLGIKVSVIGSIDMLKSHGSGNSSSKKVTSSTSSSSSNGSVDVRKNSVDQFLCQ 120

Query: 88  SKDLEPPGFLVESKQFKWKFSAVDKQHESYFGTNVQL-------------------RYFV 128
           S DL P G L  S+ F + F  + K++ESY G NV +                   R++V
Sbjct: 121 SYDLCPAGELQHSQSFPFLFRDLSKRYESYKGKNVDVAYYVKVTVMRKSTDISKIKRFWV 180

Query: 129 RL-------------NIIKGYSGNI-------------------QKEIDFIVQNLCIPPE 156
            L             N  K  + +I                   Q E   + Q L I   
Sbjct: 181 YLYNSVTTAPNTLSANETKATTNDIAGGNYAADNASDNTQTKSTQGEAADVNQVLPISHS 240

Query: 157 INNT--IKMEVGIEDCLHIEFEYDKSKYHLKDVVVGKVYFLLVRIKIKHMELDIIKMETS 214
            N    +++++GIE+CLHIEFEY KS+Y LK+V+VG++YFLL R++IKHMEL +I  E+S
Sbjct: 241 NNEPKPVRLDIGIENCLHIEFEYAKSQYSLKEVIVGRIYFLLTRLRIKHMELSLITRESS 300

Query: 215 GVGKNYTTETVTLSKFEIMDGSPIKSECIPVRLYLSGFDLTPTYKNIQNKFSVKYYINLI 274
           G+  +      T  ++EIMDGS +K E IP+RL+LSG+DLTP      N F+VK Y++L+
Sbjct: 301 GLQTSNVMTDSTAIRYEIMDGSSVKGETIPIRLFLSGYDLTPNMS--CNYFNVKNYLSLV 358

Query: 275 IVDEEERRYFKKQEIFLWRKK 295
           I+DE+ RRYFK+ EI L+R +
Sbjct: 359 IIDEDGRRYFKQSEITLYRTR 379

Lambda     K      H
   0.321    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 295
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 379
Length adjustment: 28
Effective length of query: 269
Effective length of database: 351
Effective search space:    94419
Effective search space used:    94419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)