Query= PFL2415w Pf
Annotation|Plasmodium_falciparum_Stanford|(protein coding)
Hbeta58/Vps26 protein homolog, putative
(297 letters)
>YJL053W PEP8 SGDID:S000003589, Chr X from 335815-336954, Verified
ORF, "Vacuolar protein sorting protein that forms part
of the multimeric membrane-associated retromer complex
along with Vps35p, Vps29p, Vps17p, and Vps5p; essential
for endosome-to-Golgi retrograde protein transport"
Length = 379
Score = 187 bits (475), Expect = 3e-52
Identities = 126/381 (33%), Positives = 189/381 (49%), Gaps = 89/381 (23%)
Query: 2 LSTIFGSVCSIDLKIDADDNKKFAFLRKDKKG-------EKCPIFSDGEDINGTATISLK 54
+S F I++ D ++++K + E P++ DGE + G T+ ++
Sbjct: 1 MSIFFKPPIDIEILFDNEESRKHVDIATRSSNSSYKSMKESLPVYEDGESLGGIVTLRVR 60
Query: 55 PGKKFEHYGIKLELIGQINILND--------------------------KANSYD-FFSI 87
KK +H GIK+ +IG I++L + NS D F
Sbjct: 61 DSKKVDHLGIKVSVIGSIDMLKSHGSGNSSSKKVTSSTSSSSSNGSVDVRKNSVDQFLCQ 120
Query: 88 SKDLEPPGFLVESKQFKWKFSAVDKQHESYFGTNVQL-------------------RYFV 128
S DL P G L S+ F + F + K++ESY G NV + R++V
Sbjct: 121 SYDLCPAGELQHSQSFPFLFRDLSKRYESYKGKNVDVAYYVKVTVMRKSTDISKIKRFWV 180
Query: 129 RL-------------NIIKGYSGNI-------------------QKEIDFIVQNLCIPPE 156
L N K + +I Q E + Q L I
Sbjct: 181 YLYNSVTTAPNTLSANETKATTNDIAGGNYAADNASDNTQTKSTQGEAADVNQVLPISHS 240
Query: 157 INNT--IKMEVGIEDCLHIEFEYDKSKYHLKDVVVGKVYFLLVRIKIKHMELDIIKMETS 214
N +++++GIE+CLHIEFEY KS+Y LK+V+VG++YFLL R++IKHMEL +I E+S
Sbjct: 241 NNEPKPVRLDIGIENCLHIEFEYAKSQYSLKEVIVGRIYFLLTRLRIKHMELSLITRESS 300
Query: 215 GVGKNYTTETVTLSKFEIMDGSPIKSECIPVRLYLSGFDLTPTYKNIQNKFSVKYYINLI 274
G+ + T ++EIMDGS +K E IP+RL+LSG+DLTP N F+VK Y++L+
Sbjct: 301 GLQTSNVMTDSTAIRYEIMDGSSVKGETIPIRLFLSGYDLTPNMS--CNYFNVKNYLSLV 358
Query: 275 IVDEEERRYFKKQEIFLWRKK 295
I+DE+ RRYFK+ EI L+R +
Sbjct: 359 IIDEDGRRYFKQSEITLYRTR 379
Lambda K H
0.321 0.141 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 295
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 379
Length adjustment: 28
Effective length of query: 269
Effective length of database: 351
Effective search space: 94419
Effective search space used: 94419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)