>YBR114W RAD16 SGDID:S000000318, Chr II from 467242-469614, Verified
            ORF, "Protein that recognizes and binds damaged DNA in an
            ATP-dependent manner (with Rad7p) during nucleotide
            excision repair; subunit of Nucleotide Excision Repair
            Factor 4 (NEF4); member of the SWI/SNF family"
          Length = 790

 Score =  233 bits (595), Expect = 5e-65
 Identities = 124/285 (43%), Positives = 177/285 (62%), Gaps = 23/285 (8%)

Query: 1028 SALHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLTGTPLQNRISELYSLIRF 1087
            S LH I + R+ILDEAH IK+R ++T +++ NLK    RWCL+GTPLQNRI E+YSLIRF
Sbjct: 309  SVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKT-QKRWCLSGTPLQNRIGEMYSLIRF 367

Query: 1088 IEFYPYAYYFCSKKDCKCLLLNYEMRDNKYCYFCNHSRINHFNYFNKRILKPIQSFGYRG 1147
            +   P+  YFC+K  C C   +++  D  +C  C+H  + H N+FN  +LK IQ FG  G
Sbjct: 368  LNINPFTKYFCTK--CDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEG 425

Query: 1148 EGLSGMSYLKNEVLDKILLRRTKGERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQTS 1207
             GL   + ++  +L  I+LRRTK ER  D+ L P I+ +R+D  ++EEKD Y SLY  + 
Sbjct: 426  PGLESFNNIQT-LLKNIMLRRTKVERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSK 484

Query: 1208 TQFNTYVNSNTVLHNYAHIFDLLSRLRQAADHPYLIIFG-NSFLSDPSGKFIKKNTTIIP 1266
             ++N++V    VL+NYA+IF L++R+RQ ADHP L++   N+F  D  G  I        
Sbjct: 485  RKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLVLKRLNNFPGDDIGVVI-------- 536

Query: 1267 AISNDYVCGICLENVQKRNNISTKCNHNFHKSCLKQYIESFEMEN 1311
                   C +C  N +    I +KC+H F + C+K+Y+ESF MEN
Sbjct: 537  -------CQLC--NDEAEEPIESKCHHKFCRLCIKEYVESF-MEN 571

 Score =  159 bits (403), Expect = 9e-43
 Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 13/227 (5%)

Query: 1423 LGCPVCYIPLTVDFNLLVXXXXXXXXXXXXXXXXTTYINKSFINRINTQ-EYRSSTKIEA 1481
            L CPVC+I L++D +                    ++  +S ++R+N   +++SSTKIEA
Sbjct: 575  LTCPVCHIGLSIDLS-----------QPALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEA 623

Query: 1482 VYEEVQNVINNTDD-KCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNF 1540
            + EE+  + +N    K ++FSQ+ SMLDL+E+ LK+      KL G MS   R+  +  F
Sbjct: 624  LVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYF 683

Query: 1541 NQDKQLRVLLISLKAGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIR 1600
              + Q  V L+SLKAGG  LNL  A+++FI+DPWWNP+ E Q+  R HRIGQ + V   R
Sbjct: 684  MNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITR 743

Query: 1601 FIIENTVEEKIIQLQNKKQLVFDSTIGDSGNAMQKLSKEDLAFLFHS 1647
            F IE+++E +II+LQ KK  +  +TI     A+ +L+  DL FLF++
Sbjct: 744  FCIEDSIEARIIELQEKKANMIHATINQDEAAISRLTPADLQFLFNN 790

 Score = 65.1 bits (157), Expect = 3e-14
 Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 440 KGQTLIIAPVAAVMQWKSEIEKFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVVE 499
           K  +L++AP  A+MQWK+EIE+   +  L +Y+YHG S+    ++L  YD+V+T+YAV+E
Sbjct: 230 KSPSLVVAPTVALMQWKNEIEQHT-KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLE 288

Query: 500 VNFRK 504
             FRK
Sbjct: 289 SVFRK 293

 Score = 60.5 bits (145), Expect = 7e-13
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 175 PYEIKNDLKCRNSFEMLINEENEKINSLDYLNVEKKITNYNLIIPKELKYDLLQYQKEGI 234
           PYE +N L+       L N   +  N+  Y+    K        P  +   LL +Q EG+
Sbjct: 141 PYE-RNTLRLYEHHPELRNVFTDLKNAPPYVPQRSKQ-------PDGMTIKLLPFQLEGL 192

Query: 235 YWMINQEMSNVKGGILADEMGMGKTIQAITLIL 267
           +W+I+QE S   GG+LADEMGMGKTIQ I L++
Sbjct: 193 HWLISQEESIYAGGVLADEMGMGKTIQTIALLM 225

 Score = 19.6 bits (39), Expect = 1.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 352 KNSTSDDLKVKEESDCS 368
           KN   + +++KEE D S
Sbjct: 93  KNDNDEIIEIKEERDVS 109

 Score = 17.3 bits (33), Expect = 7.3
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 795 DENTETEEKDTSGVHNEDGDTSMGVTNQKGKDK 827
           D   E    D + V + D D    + +  G DK
Sbjct: 48  DSQDEEYRDDATLVKSPDDDDKDFIIDLTGSDK 80

Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2606
Number of extensions: 117
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 6
Length of query: 1647
Length of database: 790
Length adjustment: 46
Effective length of query: 1601
Effective length of database: 744
Effective search space:  1191144
Effective search space used:  1191144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 32 (17.5 bits)
S2: 32 (16.9 bits)