>YLL008W DRS1 SGDID:S000003931, Chr XII from 131728-133986, Verified
           ORF, "Nucleolar DEAD-box protein required for ribosome
           assembly and function, including synthesis of 60S
           ribosomal subunits; constituent of 66S pre-ribosomal
           particles"
          Length = 752

 Score =  250 bits (639), Expect = 2e-70
 Identities = 168/504 (33%), Positives = 251/504 (49%), Gaps = 72/504 (14%)

Query: 89  WSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILER 148
           ++ L +SRP LK L    +  P+ IQ   IP+AL GK I+A + TGSGKT AF++PI+ER
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292

Query: 149 LLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTKYVT-ITYSLFCGGID 207
           LL                  T+ ++LLPTREL++Q  DV + + ++V+ IT+ L  GG++
Sbjct: 293 LLYK----------PAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLN 342

Query: 208 IKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKI 267
           ++QQE   K R DI + TPGR +D + NS+S  ++ +EI+V DEAD++LE GF++E  +I
Sbjct: 343 LRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEI 402

Query: 268 LDVCKFKKQILFFSATLTSDIKQLANFSLKNPVFIQSGMSFDKNVDGKXXXXXXXXXXXX 327
           + +    +Q L FSAT+ S IK L + SLK PV                           
Sbjct: 403 MGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPV--------------------------- 435

Query: 328 XXXXXXXXXXXXXXXXXFLKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYK- 386
                              +I      K +  L QEFV I +  + K +LL+  N I K 
Sbjct: 436 -------------------RIMIDPPKKAATKLTQEFVRIRKRDHLKPALLF--NLIRKL 474

Query: 387 -----NHCIIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLL 441
                   ++F   K   H + ++  LL +   ELHGS++Q++R++S+ KFK  EV  L+
Sbjct: 475 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 534

Query: 442 TTELASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQXXXXXXXXX 501
            T+LASRG+DI  +  VINY++P +   Y+HR+GRTAR G+EG + T   +         
Sbjct: 535 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVR 594

Query: 502 XXXXXXXXXXXXXXRTIAENNVLVWYKIIKENK------QKLNXXXXXXXXXXXXXMSNK 555
                               NV  W +I + NK        +               +  
Sbjct: 595 AAIKSVEENKSLTQGKALGRNV-DWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEM 653

Query: 556 SIDKIKNMITFKDEIMSRPARTWF 579
            + K +NM+  K EI +RP RTWF
Sbjct: 654 QLRKGENMLKHKKEIQARPRRTWF 677

 Score = 23.1 bits (48), Expect = 0.054
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 17 SDVDNVSEPESYDKDINGKDNTNRIKNVSDRDEDDVEEMKEG 58
          S  D   E +   K   GK+N  ++    + DED  E++  G
Sbjct: 29 SSDDEKVEAKKTTKKRKGKNNKKKVSEGDNLDEDVHEDLDAG 70

 Score = 20.0 bits (40), Expect = 0.45
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 4   KNMKKKICQDKKMSDVDNVSEPESYDKDINGKDNTNRIKN-----VSDRDEDDVE 53
           KN KKK+ +   + +  +      +  D++  D T+  +        + ++DD E
Sbjct: 47  KNNKKKVSEGDNLDEDVHEDLDAGFKFDLDADDTTSNFQGWNFLAEGESNKDDAE 101

 Score = 18.9 bits (37), Expect = 1.0
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 3  KKNMKKKICQDKKMSDVDNVSEPESYDKDIN 33
          KK  KK+    K  ++   VSE ++ D+D++
Sbjct: 38 KKTTKKR----KGKNNKKKVSEGDNLDEDVH 64

Lambda     K      H
   0.321    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 907
Number of extensions: 36
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 717
Length of database: 752
Length adjustment: 40
Effective length of query: 677
Effective length of database: 712
Effective search space:   482024
Effective search space used:   482024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)