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Pr. Gilles CARAUX 
 
Professor of Statistics and Computer Science


Agro Montpellier - Ecole Nationale Supérieure Agronomique de Montpellier

LIRMM - Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier



 

  

 

Agro Montpellier 
Place P.Viala 
34060 Montpelllier cedex
France 

Tel :

+33 (0) 499 612 281 

Fax :

+33 (0) 467 521 427

Email

caraux@lirmm.fr

LIRMM
Methods and Algorithms in Bioinformatics Team
161 rue Ada
34392 Montpellier Cedex 5

Tel :

+33 (0) 467 418 671 

Fax :

+33 (0) 467 418 500


Teaching

Undergraduate:
   Statistics and Probability
   Multidimensional data analysis
   Computer sciences
   Bioinformatics


Graduate (PhD):
   Linear Models and Experimental design.
   Data analysis methods
   Discriminant analysis
   Machine learning
   Phylogenetic reconstruction

Research interest
   Bioinformatics (Statistical analysis of the transcriptome)
   Clustering, Seriation
   Phylogenetic reconstruction
   Statistics and Probability
   Classification and Discriminant analysis


Gene expression data analysis
Clustering and Seriation methods with PermutMatrix (Bioinformatics 2005)


Publications
(since 1990)

Caraux, G., and Pinloche, S. (2005), "Permutmatrix: A Graphical Environment to Arrange Gene Expression Profiles in Optimal Linear Order," Bioinformatics, 21, 1280-1281.

Weiller, G. F., Caraux, G., and Sylvester, N. (2004), "The Modal Distribution of Protein Isoelectric Points Reflects Amino Acid Properties Rather Than Sequence Evolution," Proteomics, 4, 943-949.

Weiller, G. F., Djordjevic, M. J., Caraux, G., et al. (2001). "A specilalised proteomic database for comparing matrix-assisted laser desorption/ionization-time of flight mass spectrometry data of tryptic peptides with corresponding sequence database segments." Proteomics, 1(12), 1489-1494.

Brehelin, L., Gascuel, O., and Caraux, G. (2001). "Hidden Markov Models with Patterns to Learn Boolean Vector Sequences, and Application to the Built-in Self-Test for Integrated Circuits," IEEE-Transactions on Pattern Analysis and Machine Intelligence, 23(9), 997-1008.

Brehelin, L. Gascuel, O.,  Caraux, G.Girard, P., Landrault, C.  (2000). "Hidden Markov and Independence Models with Patterns for Sequential BIST", IEEE VLSI Test Symposium, Montréal, 359-367.

Brehelin, L. Gascuel, O., and Caraux, G. (2000). "Hidden Markov Models with Patterns and their application to integrated circuit testing" European Conference on Machine Learning, Barcelona, 75-87.

Berry, V., Gascuel, O., and Caraux, G. (2000). "Choosing the tree which actually best explains the data: another look at the bootstrap in phylogenetic reconstruction." Computational Statistics & Data Analysis, 38, 273-283

Brehelin, L., Gascuel, O., and Caraux, G. (1999) "Learning sequences of vectors using Hidden Markov Models with Patterns; Application to the test of integrated circuits." IJCAI'99 Workshop on "Neural, Symbolic, and Reinforcement Methods for Sequence Learning", 1999.

Gascuel, O., Bouchon-Meunier, B., Caraux, G., Gallinari, P., Guénoche, A., Guermeur, Y., Lechevalier, Y., Marsala, C., Miclet, L., Nicolas, J., Nock, R., Ramdani, M., Sebag, M., Tallur, B., Venturini, G., and Vitte, P. (1998). "Supervised classification. A comparison of twelve numerical, symbolic and hybrid methods." International Journal of Pattern Recognition and Artificial Intelligence, 12(5), 517-571. 

V.Berry, O. Gascuel et G. Caraux, "Choosing the tree which actually best explains the data: another look at the bootstrap in phylogenetic reconstruction ", Computing Science and Statistics, 29(2), 1997, p 227-232. 

G. Andrieu, G. Caraux et O. Gascuel, " Exact confidence interval of evolutionary distances and comparison with usual approaches including bootstrap method ", Biol. Mol. Evol., 14(8), 1997, p. 875-882.

G. Caraux et Y. Lechevalier, " Règles de décision de Bayes et méthodes statistiques de discrimination ", Revue d'Intelligence Artificielle, 10(2-3), 1996, p. 219-283.

G. Caraux, O. Gascuel, G. Andrieu et D. Levy, " Approches informatiques de la reconstruction phylogénétique ", Technique et Science Informatiques (TSI), 14(2), 1995, p. 113-139.

O. Gascuel et G. Caraux, " Statistical significance in inductive learning ", in ECAI 1992, Wiley, Vienne, (1992), p. 435-439.

O. Gascuel et G. Caraux, " Distribution-free performance bounds with the resubstitution error estimate ", Pattern Recognition Letters, 13, 1992b, p. 757-764.

O. Gascuel et G. Caraux, " Bounds on the expectation of order statistics for dependent variates ", Statistics & Probability Letters, 15, 1992a, p. 143-148.

G. Caraux et O. Gascuel, " Bornes associées aux statistiques d'ordre de variables non nécessairement indépendantes ", in XXIVème Journées de Statistiques, Bruxelles, (1992), p. 108-110. 

G. Caraux et O. Gascuel, " Bounds on distribution function of order statistics for dependent variates ", Statistics & Probability Letters, 14, 1992, p. 103-105.

G. Caraux et O. Gascuel, " Approximations et majorations optimales des statistiques d'ordre d'un échantillon ", Revue de Statistiques Appliquées, 39, n°1, 1991a, p. 21-35.