Publications

Topics :
Discrete mathematics and algorithmics
Computer science for biology
Computer science for natural
language and text processing
Visualization

Journal articles

• [J2] 2010: Christophe Crespelle and Philippe Gambette,
  Unrestricted and Complete Breadth-First Search of Trapezoid Graphs in O(n) Time,
  IPL (Information Processing Letters), to appear (preprint).
• [J1] 2008: Philippe Gambette and Daniel H. Huson,
  Improved Layout of Phylogenetic Networks,
  TCBB (IEEE/ACM Transactions on Computational Biology and Bioinformatics), 5(3), p. 472-479, [DOI]. (⇒ Erdős nb 3)

Conferences

• [C6] 2010: Delphine Amstutz and Philippe Gambette,
  Utilisation de la visualisation en nuage arboré pour l'analyse littéraire (Using the tree cloud visualization for literature analysis),
  JADT'10 (Proceedings of the 10^th International Conference on statistical analysis of textual data), to appear (supplementary material).
• [C5] 2009: Christophe Crespelle and Philippe Gambette,
  Efficient Neighbourhood Encoding for Interval Graphs and Permutation Graphs and O(n) Breadth-First Search,
  IWOCA'09 (Proceedings of the 20^th International Workshop on Combinatorial Algorithms), LNCS 5874, p. 146-157, [DOI].
• [C4] 2009: Daniel Huson, Regula Rupp, Vincent Berry, Philippe Gambette and Christophe Paul,
  Computing Galled Networks from Real Data,
  ISMB/ECCB'09 (Proceedings of the 17^th Annual Conference on Intelligent Systems for Molecular Biology & 8^th European Conference on Computational Biology), Bioinformatics 25(12), p. i85-i93, [DOI].
• [C3] 2009: Philippe Gambette, Vincent Berry and Christophe Paul,
  The Structure of Level-k Phylogenetic Networks,
  CPM'09 (Proceedings of the 20^th Annual Symposium on Combinatorial Pattern Matching), LNCS 5577, p. 289-300, [DOI].
• [C2] 2009: Philippe Gambette and Jean Véronis,
  Visualising a Text with a Tree Cloud,
  IFCS'09 (Proceedings of the International Federation of Classification Societies 2009 Conference), Studies in Classification, Data Analysis, and Knowledge Organization, to appear.
• [C1] 2007: Philippe Gambette and Stéphane Vialette,
  On Restrictions of Balanced 2-Interval Graphs,
  WG'07 (Proceedings of the 33^rd International Workshop on Graph-Theoretic Concepts in Computer Science), LNCS 4769, p. 55-65, [DOI].

Dissertations

• [D3] 2006: Les graphes 2-intervallaires (in French, 2-Interval Graphs)
  Master Thesis supervised by Michel Habib at LIAFA.
• [D2] 2005: La représentation des réseaux phylogénétiques (in French, Representation of Phylogenetic Networks)
  Maîtrise Thesis supervised by Daniel Huson at ZBIT, Tübingen University.
• [D1] 2004: Quelques propriétés topologiques des arbres de duplication (in French, Some Topological Properties of Duplication Trees)
  Bachelor Thesis supervised by Olivier Gascuel and Denis Bertrand at LIRMM.

Technical Reports

• 2009: A Note on Encodings of Phylogenetic Networks of Bounded Level (17p, with Katharina Huber).
• 2009: A Note on Minimum Flip Consensus and Maximum Compatible Subset (2p, complement to [C4]).
• 2008: Décomposition de graphes pour la reconstruction de réseaux phylogénétiques (21p, in French, Graph decomposition for the reconstruction of phylogenetic networks, progress report on PhD research).
• 2008: An Obstruction Approach to Reconstruct Phylogenies and Level-k Networks from Triplets (22p, with Vincent Berry and Christophe Paul).
• 2007: Graphes (2,2)-intervallaires bipartis (4p, in French, Bipartite (2,2)-Interval Graphs).
• 2007: Graphes 2-intervallaires, variantes et restrictions (67p, in French, 2-Interval Graphs, Variants and Restrictions, with Michel Habib and Stéphane Vialette).