 <HTML> <HEAD> <TITLE>Logiciels pour la biologie installs sur central</TITLE> <LINK REV="made" HREF="mailto:www@pasteur.fr"> <META NAME="Description" CONTENT="L'Institut Pasteur est un centre de recherche en biologie."> <META NAME="KeyWords" CONTENT="Pasteur, biologie"> <meta name="Author"    content="Pasteur Webmaster, www@pasteur.fr"> <meta name="Generator" content="WML 1.6.7 (02-08-1998)"> <meta name="Modified"  content="09-11-1998 15:35:20"> </HEAD> <BODY BGCOLOR="#FFFFFF" VLINK="#003399" LINK="#0033ff" TEXT="#000000"> <p align="center"> <a href="http://www.pasteur.fr/quoideneuf.html"><img align="bottom" border="0" src="http://www.pasteur.fr/icono/bouton-nouveau-s.gif" alt="Nouveaux"></a> <a href="http://www.pasteur.fr/search/"><img align="bottom" border="0" src="http://www.pasteur.fr/icono/bouton-recherche-s.gif" alt="Recherche"></a> <a href="http://www.pasteur.fr/guide.html"><img align="bottom" border="0" src="http://www.pasteur.fr/icono/bouton-guide-s.gif" alt="Guide"></a> </p> <H1 ALIGN="center"> <font color="#003399">Logiciels pour la biologie installs sur central</font> </H1> <h3 ALIGN="center"><font color="#003399">OUTILS GNRAUX</font></h3> <hr> Dernire modification : 19 Mar 2003 18:48. <hr>          <ul>  	    <li>	<A HREF="#OUTILSGNRAUXANALYSEDESQUENCES">Analyse de Squences</A>  	    <li>	<A HREF="#OUTILSGNRAUXDITEURDESQUENCES">diteur de Squences</A>  	    <li>	<A HREF="#OUTILSGNRAUXOUTILSDECONVERSIONDEFORMATDESQUENCES">Outils de Conversion de Format de Squences</A>          </ul> <hr>  <ul>  <li>	<a name=OUTILSGNRAUXANALYSEDESQUENCES><h2>Analyse de Squences</h2> <p> <dl>  	<dt>	<a name=ARTEMIS><i>artemis</i> (4) 	<dd>	DNA sequence viewer and annotation tool[X11]   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>artemis</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/artemis//">/local/gensoft/doc/artemis/</a></td></tr>      	<tr><td><A HREF="http://www.sanger.ac.uk/Software/Artemis/stable/manual/">http://www.sanger.ac.uk/Software/Artemis/stable/manual/</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Just type artemis to start.</td>       </tr>         </table>  	<p>  	<dt>	<a name=DARWIN><i>DARWIN</i> (2.1a) 	<dd>	(Data Analysis and Retrieval With Indexed Nucleotide/peptide squences) Langage de programmation interprt pour l'analyse de squences.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>darwin</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/darwin/darwin.ps">/local/gensoft/doc/darwin/darwin.ps</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/darwin//">/local/gensoft/doc/darwin/</a></td></tr>      	<tr><td><A HREF="http://cbrg.inf.ethz.ch/">http://cbrg.inf.ethz.ch/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=EMBOSS><i>EMBOSS</i> (2.3.1) 	<dd>	European Molecular Biology Open Software Suite[X11]   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>abiview</td>    	</tr>  	<tr>    	<td>acdc</td>    	</tr>  	<tr>    	<td>alignwrap</td>    	</tr>  	<tr>    	<td>antigenic</td>    	</tr>  	<tr>    	<td>backtranseq</td>    	</tr>  	<tr>    	<td>banana</td>    	</tr>  	<tr>    	<td>biosed</td>    	</tr>  	<tr>    	<td>btwisted</td>    	</tr>  	<tr>    	<td>cai</td>    	</tr>  	<tr>    	<td>chaos</td>    	</tr>  	<tr>    	<td>charge</td>    	</tr>  	<tr>    	<td>checktrans</td>    	</tr>  	<tr>    	<td>chips</td>    	</tr>  	<tr>    	<td>cirdna</td>    	</tr>  	<tr>    	<td>codcmp</td>    	</tr>  	<tr>    	<td>coderet</td>    	</tr>  	<tr>    	<td>compseq</td>    	</tr>  	<tr>    	<td>cons</td>    	</tr>  	<tr>    	<td>contacts</td>    	</tr>  	<tr>    	<td>cpgplot</td>    	</tr>  	<tr>    	<td>cpgreport</td>    	</tr>  	<tr>    	<td>cusp</td>    	</tr>  	<tr>    	<td>cutgextract</td>    	</tr>  	<tr>    	<td>cutseq</td>    	</tr>  	<tr>    	<td>dan</td>    	</tr>  	<tr>    	<td>dbiblast</td>    	</tr>  	<tr>    	<td>dbifasta</td>    	</tr>  	<tr>    	<td>dbiflat</td>    	</tr>  	<tr>    	<td>dbigcg</td>    	</tr>  	<tr>    	<td>degapseq</td>    	</tr>  	<tr>    	<td>descseq</td>    	</tr>  	<tr>    	<td>dichet</td>    	</tr>  	<tr>    	<td>diffseq</td>    	</tr>  	<tr>    	<td>digest</td>    	</tr>  	<tr>    	<td>distmat</td>    	</tr>  	<tr>    	<td>domainer</td>    	</tr>  	<tr>    	<td>dotmatcher</td>    	</tr>  	<tr>    	<td>dotpath</td>    	</tr>  	<tr>    	<td>dottup</td>    	</tr>  	<tr>    	<td>dreg</td>    	</tr>  	<tr>    	<td>einverted</td>    	</tr>  	<tr>    	<td>embossdata</td>    	</tr>  	<tr>    	<td>embossversion</td>    	</tr>  	<tr>    	<td>emma</td>    	</tr>  	<tr>    	<td>emowse</td>    	</tr>  	<tr>    	<td>entret</td>    	</tr>  	<tr>    	<td>eprimer3</td>    	</tr>  	<tr>    	<td>equicktandem</td>    	</tr>  	<tr>    	<td>est2genome</td>    	</tr>  	<tr>    	<td>etandem</td>    	</tr>  	<tr>    	<td>extractfeat</td>    	</tr>  	<tr>    	<td>extractseq</td>    	</tr>  	<tr>    	<td>findkm</td>    	</tr>  	<tr>    	<td>freak</td>    	</tr>  	<tr>    	<td>fuzznuc</td>    	</tr>  	<tr>    	<td>fuzzpro</td>    	</tr>  	<tr>    	<td>fuzztran</td>    	</tr>  	<tr>    	<td>garnier</td>    	</tr>  	<tr>    	<td>geecee</td>    	</tr>  	<tr>    	<td>getorf</td>    	</tr>  	<tr>    	<td>helixturnhelix</td>    	</tr>  	<tr>    	<td>hmoment</td>    	</tr>  	<tr>    	<td>iep</td>    	</tr>  	<tr>    	<td>infoalign</td>    	</tr>  	<tr>    	<td>infoseq</td>    	</tr>  	<tr>    	<td>interface</td>    	</tr>  	<tr>    	<td>isochore</td>    	</tr>  	<tr>    	<td>jembossctl</td>    	</tr>  	<tr>    	<td>lindna</td>    	</tr>  	<tr>    	<td>listor</td>    	</tr>  	<tr>    	<td>marscan</td>    	</tr>  	<tr>    	<td>maskfeat</td>    	</tr>  	<tr>    	<td>maskseq</td>    	</tr>  	<tr>    	<td>matcher</td>    	</tr>  	<tr>    	<td>megamerger</td>    	</tr>  	<tr>    	<td>merger</td>    	</tr>  	<tr>    	<td>msbar</td>    	</tr>  	<tr>    	<td>mwfilter</td>    	</tr>  	<tr>    	<td>needle</td>    	</tr>  	<tr>    	<td>newcpgreport</td>    	</tr>  	<tr>    	<td>newcpgseek</td>    	</tr>  	<tr>    	<td>newseq</td>    	</tr>  	<tr>    	<td>noreturn</td>    	</tr>  	<tr>    	<td>notseq</td>    	</tr>  	<tr>    	<td>nrscope</td>    	</tr>  	<tr>    	<td>nthseq</td>    	</tr>  	<tr>    	<td>octanol</td>    	</tr>  	<tr>    	<td>oddcomp</td>    	</tr>  	<tr>    	<td>palindrome</td>    	</tr>  	<tr>    	<td>pasteseq</td>    	</tr>  	<tr>    	<td>patmatdb</td>    	</tr>  	<tr>    	<td>patmatmotifs</td>    	</tr>  	<tr>    	<td>pdbtosp</td>    	</tr>  	<tr>    	<td>pepcoil</td>    	</tr>  	<tr>    	<td>pepinfo</td>    	</tr>  	<tr>    	<td>pepnet</td>    	</tr>  	<tr>    	<td>pepstats</td>    	</tr>  	<tr>    	<td>pepwheel</td>    	</tr>  	<tr>    	<td>pepwindow</td>    	</tr>  	<tr>    	<td>pepwindowall</td>    	</tr>  	<tr>    	<td>plotcon</td>    	</tr>  	<tr>    	<td>plotorf</td>    	</tr>  	<tr>    	<td>polydot</td>    	</tr>  	<tr>    	<td>preg</td>    	</tr>  	<tr>    	<td>prettyplot</td>    	</tr>  	<tr>    	<td>prettyseq</td>    	</tr>  	<tr>    	<td>primersearch</td>    	</tr>  	<tr>    	<td>printsextract</td>    	</tr>  	<tr>    	<td>profit</td>    	</tr>  	<tr>    	<td>prophecy</td>    	</tr>  	<tr>    	<td>prophet</td>    	</tr>  	<tr>    	<td>prosextract</td>    	</tr>  	<tr>    	<td>pscan</td>    	</tr>  	<tr>    	<td>psiblasts</td>    	</tr>  	<tr>    	<td>rebaseextract</td>    	</tr>  	<tr>    	<td>recoder</td>    	</tr>  	<tr>    	<td>redata</td>    	</tr>  	<tr>    	<td>remap</td>    	</tr>  	<tr>    	<td>restover</td>    	</tr>  	<tr>    	<td>restrict</td>    	</tr>  	<tr>    	<td>revseq</td>    	</tr>  	<tr>    	<td>scopalign</td>    	</tr>  	<tr>    	<td>scope</td>    	</tr>  	<tr>    	<td>scopparse</td>    	</tr>  	<tr>    	<td>seealso</td>    	</tr>  	<tr>    	<td>seqmatchall</td>    	</tr>  	<tr>    	<td>seqnr</td>    	</tr>  	<tr>    	<td>seqret</td>    	</tr>  	<tr>    	<td>seqretsplit</td>    	</tr>  	<tr>    	<td>seqsort</td>    	</tr>  	<tr>    	<td>showalign</td>    	</tr>  	<tr>    	<td>showdb</td>    	</tr>  	<tr>    	<td>showfeat</td>    	</tr>  	<tr>    	<td>showorf</td>    	</tr>  	<tr>    	<td>showseq</td>    	</tr>  	<tr>    	<td>shuffleseq</td>    	</tr>  	<tr>    	<td>sigcleave</td>    	</tr>  	<tr>    	<td>siggen</td>    	</tr>  	<tr>    	<td>sigscan</td>    	</tr>  	<tr>    	<td>silent</td>    	</tr>  	<tr>    	<td>splitter</td>    	</tr>  	<tr>    	<td>stretcher</td>    	</tr>  	<tr>    	<td>stssearch</td>    	</tr>  	<tr>    	<td>supermatcher</td>    	</tr>  	<tr>    	<td>swissparse</td>    	</tr>  	<tr>    	<td>syco</td>    	</tr>  	<tr>    	<td>textsearch</td>    	</tr>  	<tr>    	<td>tfextract</td>    	</tr>  	<tr>    	<td>tfm</td>    	</tr>  	<tr>    	<td>tfscan</td>    	</tr>  	<tr>    	<td>tmap</td>    	</tr>  	<tr>    	<td>transeq</td>    	</tr>  	<tr>    	<td>trimest</td>    	</tr>  	<tr>    	<td>trimseq</td>    	</tr>  	<tr>    	<td>vectorstrip</td>    	</tr>  	<tr>    	<td>water</td>    	</tr>  	<tr>    	<td>whichdb</td>    	</tr>  	<tr>    	<td>wobble</td>    	</tr>  	<tr>    	<td>wordcount</td>    	</tr>  	<tr>    	<td>wordmatch</td>    	</tr>  	<tr>    	<td>wossname</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="http://www.pasteur.fr/cgi-bin/biology/bnb_s.pl?query=EMBOSS">EMBOSS</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/EMBOSS/">http://bioweb.pasteur.fr/docs/EMBOSS/</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/EMBOSS/doc/">http://bioweb.pasteur.fr/docs/doc-gensoft/EMBOSS/doc/</a></td></tr>      	<tr><td><A HREF="http://www.uk.embnet.org/Software/EMBOSS/">http://www.uk.embnet.org/Software/EMBOSS/</a></td></tr>      	<tr><td><A HREF="http://www.uk.embnet.org/Software/EMBOSS/Apps/">http://www.uk.embnet.org/Software/EMBOSS/Apps/</a></td></tr>      	<tr><td><A HREF="http://www.uk.embnet.org/Software/EMBOSS/Doc/Tutorial/">http://www.uk.embnet.org/Software/EMBOSS/Doc/Tutorial/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GCG><i>GCG</i> (10.2) 	<dd>	Environnement GCG pour les programmes d'analyse de squences.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>gcg</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/gcgmanual.html">http://bioweb.pasteur.fr/docs/gcg/gcgmanual.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Tous les programmes dont le nom commence par GCG, doivent tre utiliss en environnement GCG. Pour y entrer: utiliser la commande gcg une seule fois, l'ordinateur l'indique en commenant ses lignes par gcg: >. Pour en sortir: utiliser la commande exit </td>       </tr>         </table>  	<p>  	<dt>	<a name=GFF2PS><i>gff2ps</i> (0.94) 	<dd>	Converting gff-formated genomic data-sets to  PostScript.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>gff2ps</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>gff2ps -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/gff2ps.html">gff2ps</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/gff2ps/">/local/gensoft/doc/gff2ps</a></td></tr>    	</table>  	<p>  	<dt>	<a name=LCP><i>Lcp</i> (1992) 	<dd>	Local Content Program:  a program for identifying regions of a sequence satisfying local content requirements.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>Lcp</td>      	<td><A HREF="/docs/man/doc/Lcp.1">man Lcp</a></td>    	</tr>  	</table>  	<p>  	<dt>	<a name=MAGPIE><i>MAGPIE</i> (N/A) 	<dd>	Multipurpose Automated Genome Project Investigation Environment.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>  	</tr>  	<tr>  	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.mcs.anl.gov/home/gaasterl/magpie.html">http://www.mcs.anl.gov/home/gaasterl/magpie.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Please contact help@pasteur.fr if you are interested.</td>       </tr>         </table>  	<p>  	<dt>	<a name=SEG><i>Seg</i> (199910) 	<dd>	Segmentation de squences par complxit locale.  Voir aussi : <a href="gensoft-tools.html#XNU">XNU</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>seg</td>      	<td><A HREF="/docs/man/man/seg.1.html">man seg</a></td>    	</tr>  	<tr>    	<td>pseg</td>    	</tr>  	<tr>    	<td>nseg</td>    	</tr>  	</table>  	<p>  	<dt>	<a name=SEQPUP><i>SEQPUP</i>  	<dd>	dition et analyses de squences. Alignements  multiples.[X11]   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>SeqPup</td>      	<td><A HREF="/docs/man/doc/seqpup.1">man seqpup</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Version Macintosh: <A HREF="ftp://ftp.pasteur.fr/pub/GenSoft/Macintosh/sequence_tools">ftp://ftp.pasteur.fr/pub/GenSoft/Macintosh/sequence_tools</A></td>       </tr>         </table>  	<p>  	<dt>	<a name=SLBC><i>SLBC</i> (2.7) 	<dd>	BCM Search Launcher Batch Client. The Search Launcher Batch Client (SLBC) will read-in multiple input files, perform a specified search (e.g., BLAST, BEAUTY) on each sequence (one at a time), then store the result files on the user's system as individual HTML documents. The search results can then be viewed using Netscape, MS Internet Explorer or another HTML viewer.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>bcm-search-launcher</td>    	</tr>  	<tr>    	<td>SLBC</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://dot.imgen.bcm.tmc.edu:9331/downloads/software/batch_client.html">http://dot.imgen.bcm.tmc.edu:9331/downloads/software/batch_client.html</a></td></tr>      	<tr><td><A HREF="http://dot.imgen.bcm.tmc.edu:9331/">http://dot.imgen.bcm.tmc.edu:9331/</a></td></tr>      	<tr><td><A HREF="http://dot.imgen.bcm.tmc.edu:9331/docs/sl_links.html">http://dot.imgen.bcm.tmc.edu:9331/docs/sl_links.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=XNU><i>XNU</i>  	<dd>	Masque les rptitions en tandem dans une squence.   Voir aussi : <a href="gensoft-tools.html#SEG">Seg</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>xnu</td>      	<td><A HREF="/docs/man/man/xnu.1.html">man xnu</a></td>    	</tr>  	</table>  	<p>  </dl> <p>  <li>	<a name=OUTILSGNRAUXDITEURDESQUENCES><h2>diteur de Squences</h2> <p> <dl>  	<dt>	<a name=LOADSEQ><i>loadseq</i>  	<dd>	This utility allows you to concatenate many sequences. Available on the Web only.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>  	</tr>  	<tr>  	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/loadseq-simple.html">loadseq</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/loadseq/howto.html">/local/gensoft/doc/loadseq/howto.html</a></td></tr>    	</table>  	<p>  </dl> <p>  <li>	<a name=OUTILSGNRAUXOUTILSDECONVERSIONDEFORMATDESQUENCES><h2>Outils de Conversion de Format de Squences</h2> <p> <dl>  	<dt>	<a name=CLUS2NEXUS><i>clus2nexus</i> (1) 	<dd>	convert an alignment in clustalw format to nexus format   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>clus2nexus</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>clus2nexus -help</td></tr>    	</table>  	<p>  	<dt>	<a name=FASTASPLITTER><i>fastasplitter</i> (1) 	<dd>	Split a fasta file into a set of smaller ones   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>fastasplitter</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/fastasplitter.html">fastasplitter</a></td></tr>    	</table>  	<p>  	<dt>	<a name=FMTSEQ><i>fmtseq</i>  	<dd>	Conversion de formats de sequence.  Voir aussi : <a href="gensoft-prog.html#SEQIO">SEQIO</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>fmtseq</td>      	<td><A HREF="/docs/man/doc/fmtseq.1">man fmtseq</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/formats-fr.html">fmtseq</a></td></tr>    	</table>  	<p>  	<dt>	<a name=FROMMASE><i>fromMase</i> (1) 	<dd>	Conversion d'un alignement en format Mase vers MSF, clustalw ou fasta.  Le format Mase est pratique pour les logiciels SEAVIEW et phylo_win.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>fromMase</td>    	</tr>  	</table>  	<p>  	<dt>	<a name=GB2XML><i>gb2xml</i> (1.06) 	<dd>	Genbank to XML conversion tool.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>gb2xml</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/gb2xml-simple.html">gb2xml</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="ftp://ftp.pasteur.fr/pub/GenSoft/unix/db_soft/gb2xml">ftp://ftp.pasteur.fr/pub/GenSoft/unix/db_soft/gb2xml</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GCGCHOPUP><i>GCG ChopUp</i>  	<dd>	ChopUp  converts a non-GCG sequence file containing lines as  long as 32,000 characters into  a new file containing lines no longer than 50 characters.   The new  file  can be  read  by  Reformat  to create  a GCG-format sequence file.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>chopup</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp chopup</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/chopup.html">http://bioweb.pasteur.fr/docs/gcg/chopup.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGREFORMAT><i>GCG Reformat</i>  	<dd>	Reformat rewrites sequence file(s), scoring matrix file(s), or enzyme      data file(s) so that they can be read by GCG programs.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>reformat</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp reformat</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/reformat.html">http://bioweb.pasteur.fr/docs/gcg/reformat.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=PDB2FASTA><i>pdb2fasta</i> (1) 	<dd>	Extracts the sequence from a PDB file.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>pdb2fasta</td>    	</tr>  	</table>  	<p>  	<dt>	<a name=READNEXUS><i>readnexus</i> (1.4) 	<dd>	Convert NEXUS files (from PAUP or MacClade) into  fasta or mega format.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>readnexus</td>    	</tr>  	</table>  	<p>  	<dt>	<a name=READSEQ><i>READSEQ</i> (2.0.6) 	<dd>	Conversions de formats. Brin complmentaire.  Voir aussi : <a href="gensoft-tools.html#FMTSEQ">fmtseq</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>readseq</td>      	<td>man readseq</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/readseq-simple.html">READSEQ</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/readseq-help.html">http://bioweb.pasteur.fr/docs/readseq-help.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=READSEQ2><i>readseq2</i> (2.1.6) 	<dd>	Conversion de formats.  Extraction de features.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>readseq2</td>      	<td><A HREF="/docs/man/doc/readseq2.1">man readseq2</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/cgi-bin/readseq2/readseq.cgi">readseq2</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/cgi-bin/readseq2/readseq.cgi">http://bioweb.pasteur.fr/cgi-bin/readseq2/readseq.cgi</a></td></tr>      	<tr><td><A HREF="/cgi-bin/readseq2/readseq.cgi?morehelp">http://bioweb.pasteur.fr/cgi-bin/readseq2/readseq.cgi?morehelp</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>version java  changement de numero de formats</td>       </tr>         </table>  	<p>  	<dt>	<a name=SEQIO><i>SEQIO</i> (1.2.2) 	<dd>	Conversions de formats. Interface de programmation pour les entres-sorties de squences.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>fmtseq</td>      	<td><A HREF="/docs/man/doc/fmtseq.1">man fmtseq</a></td>    	</tr>  	<tr>    	<td>idxseq</td>      	<td><A HREF="/docs/man/doc/idxseq.1">man idxseq</a></td>    	</tr>  	<tr>    	<td>grepseq</td>    	</tr>  	<tr>    	<td>wcseq</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td><A HREF="/docs/man/doc/seqio.1">man seqio</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/seqio/">/local/gensoft/doc/seqio</a></td></tr>      	<tr><td><A HREF="/docs/seqio/seqio.html">http://bioweb.pasteur.fr/docs/seqio/seqio.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Compile with: -I/local/gensoft/include. Link with /local/gensoft/lib/seqio/seqio.o</td>       </tr>         </table>  	<p>  </dl> <p>  </ul> <p>  </BODY> </HTML> 
