 <HTML> <HEAD> <TITLE>Logiciels pour la biologie installs sur central</TITLE> <LINK REV="made" HREF="mailto:www@pasteur.fr"> <META NAME="Description" CONTENT="L'Institut Pasteur est un centre de recherche en biologie."> <META NAME="KeyWords" CONTENT="Pasteur, biologie"> <meta name="Author"    content="Pasteur Webmaster, www@pasteur.fr"> <meta name="Generator" content="WML 1.6.7 (02-08-1998)"> <meta name="Modified"  content="09-11-1998 15:35:20"> </HEAD> <BODY BGCOLOR="#FFFFFF" VLINK="#003399" LINK="#0033ff" TEXT="#000000"> <p align="center"> <a href="http://www.pasteur.fr/quoideneuf.html"><img align="bottom" border="0" src="http://www.pasteur.fr/icono/bouton-nouveau-s.gif" alt="Nouveaux"></a> <a href="http://www.pasteur.fr/search/"><img align="bottom" border="0" src="http://www.pasteur.fr/icono/bouton-recherche-s.gif" alt="Recherche"></a> <a href="http://www.pasteur.fr/guide.html"><img align="bottom" border="0" src="http://www.pasteur.fr/icono/bouton-guide-s.gif" alt="Guide"></a> </p> <H1 ALIGN="center"> <font color="#003399">Logiciels pour la biologie installs sur central</font> </H1> <h3 ALIGN="center"><font color="#003399">ACIDES NUCLIQUES</font></h3> <hr> Dernire modification : 19 Mar 2003 18:48. <hr>          <ul>  	    <li>	<A HREF="#ACIDESNUCLIQUESOUTILSGNRAUX">Outils Gnraux</A>  	    <li>	<A HREF="#ACIDESNUCLIQUESRECHERCHEDESITESSPCIFIQUES">Recherche de Sites Spcifiques</A>  	    <li>	<A HREF="#ACIDESNUCLIQUESCONCEPTIONETSYNTHSED'AMORCES">Conception et Synthse d'Amorces</A>  	    <li>	<A HREF="#ACIDESNUCLIQUESDCOUVERTEDEMOTIFS">Dcouverte de Motifs</A>  	    <li>	<A HREF="#ACIDESNUCLIQUESANALYSED'ARN">Analyse d'ARN</A>  	    <li>	<A HREF="#ACIDESNUCLIQUESRECHERCHEDEGNES,TRADUCTION,RGIONSCODANTES">Recherche de Gnes, Traduction, Rgions codantes</A>          </ul> <hr>  <ul>  <li>	<a name=ACIDESNUCLIQUESOUTILSGNRAUX><h2>Outils Gnraux</h2> <p> <dl>  	<dt>	<a name=CODNOCOD><i>CODNOCOD</i> (1) 	<dd>	Reads genbank format sequence entries and outputs various  features.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>codnocod</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>codnocod -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/codnocod.html">CODNOCOD</a></td></tr>    	</table>  	<p>  	<dt>	<a name=DNA2PROTAL><i>dna2protal</i> (1) 	<dd>	Translates a DNA alignment, with gaps, into its protein equivalent.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>dna2protal</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>dna2protal -h</td></tr>    	</table>  	<p>  	<dt>	<a name=DNAP><i>dnap</i> (1) 	<dd>	Check whether a sequence is DNA.  Voir aussi : <a href="gensoft-prog.html#SEQUTILS">SeqUtils</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>dnap</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>dnap -h</td></tr>    	</table>  	<p>  	<dt>	<a name=ESTATE><i>ESTate</i> (0.5.0) 	<dd>	Expressed Sequence Tag Analysis Tools Etc   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>alignsearch</td>    	</tr>  	<tr>    	<td>calcwordprob</td>      	<td><A HREF="/docs/man/man/calcwordprob.1.html">man calcwordprob</a></td>    	</tr>  	<tr>    	<td>estcluster</td>      	<td><A HREF="/docs/man/man/estcluster.1.html">man estcluster</a></td>    	</tr>  	<tr>    	<td>fasta2usage</td>      	<td><A HREF="/docs/man/man/fasta2usage.1.html">man fasta2usage</a></td>    	</tr>  	<tr>    	<td>flat2coding</td>      	<td><A HREF="/docs/man/man/flat2coding.1.html">man flat2coding</a></td>    	</tr>  	<tr>    	<td>framefinder</td>      	<td><A HREF="/docs/man/man/framefinder.1.html">man framefinder</a></td>    	</tr>  	<tr>    	<td>precluster</td>      	<td><A HREF="/docs/man/man/precluster.1.html">man precluster</a></td>    	</tr>  	<tr>    	<td>revcomp</td>    	</tr>  	<tr>    	<td>vpbuild</td>      	<td><A HREF="/docs/man/man/vpbuild.1.html">man vpbuild</a></td>    	</tr>  	<tr>    	<td>vpsearch</td>      	<td><A HREF="/docs/man/man/vpsearch.1.html">man vpsearch</a></td>    	</tr>  	<tr>    	<td>wordsearch</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td><A HREF="/docs/man/man/ESTate.1.html">man ESTate</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.hgmp.mrc.ac.uk/~gslater/ESTate/">http://www.hgmp.mrc.ac.uk/~gslater/ESTate/</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/ESTate/">/local/gensoft/doc/ESTate</a></td></tr>    	</table>  	<p>  	<dt>	<a name=EXTRACTCDS><i>extractcds</i> (1.0) 	<dd>	Extracts translation(s) from an Embl or Genbank entry   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>extractcds</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>extractcds -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/extractcds.html">extractcds</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GRS><i>GRS</i> (1.1) 	<dd>	A Graphic Tool for Genome Retrieval and Segment Analysis   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>grs</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.bioinformatics.org/~thomas/software/grs/">http://www.bioinformatics.org/~thomas/software/grs/</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Set database choice for blast in Preferences menu.</td>       </tr>         </table>  	<p>  	<dt>	<a name=STADEN><i>STADEN</i> (2001.0) 	<dd>	Outils d'analyse de squences. Assemblage de contigs.[X11]   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>  	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td><A HREF="/docs/man/doc/staden.4">man staden</a></td></tr>      	<tr><td><A HREF="/docs/man/man/makeSCF.1.html">man makeSCF</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/staden/">http://bioweb.pasteur.fr/docs/staden/</a></td></tr>    	</table>  	<p>  </dl> <p>  <li>	<a name=ACIDESNUCLIQUESRECHERCHEDESITESSPCIFIQUES><h2>Recherche de Sites Spcifiques</h2> <p> <dl>  	<dt>	<a name=CONSINSPECTOR><i>ConsInspector</i> (3.3) 	<dd>	ConsInspector recherche des sites de liaison dans une squence d'acides  nucliques par comparaison avec des squences consensus.   Voir aussi : <a href="gensoft-na.html#MATINSPECTOR">MatInspector</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>consinspector</td>      	<td><A HREF="/docs/man/doc/consinspector.1">man consinspector</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.gsf.de/biodv/consinspector.html">http://www.gsf.de/biodv/consinspector.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=FLINQS><i>flinqs</i> (1.1) 	<dd>	Find linker in query sequence   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>flinqs</td>      	<td><A HREF="/docs/man/doc/flinqs.1">man flinqs</a></td>    	</tr>  	</table>  	<p>  	<dt>	<a name=GCGFINGERPRINT><i>GCG Fingerprint</i>  	<dd>	Fingerprint identifies the products of T1 ribonuclease digestion.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>fingerprint</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp fingerprint</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/fingerprint.html">http://bioweb.pasteur.fr/docs/gcg/fingerprint.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGMAPPLOT><i>GCG MapPlot</i>  	<dd>	MapPlot displays restriction sites graphically.  If you don't have  a plotter, MapPlot can write a text file that approximates the graph.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>mapplot</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp mapplot</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/mapplot.html">http://bioweb.pasteur.fr/docs/gcg/mapplot.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGMAPSORT><i>GCG MapSort</i>  	<dd>	MapSort finds the coordinates of the restriction enzyme cuts in a DNA sequence  and  sorts the fragments of  the resulting  digest by size. MapSort  can  sort  the  fragments  from single  or  multiple  enzyme digests.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>mapsort</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp mapsort</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/mapsort.html">http://bioweb.pasteur.fr/docs/gcg/mapsort.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGPLASMIDMAP><i>GCG PlasmidMap</i>  	<dd>	PlasmidMap  draws a circular plot  of a  plasmid construct.   It  can display  restriction patterns, inserts,  and known  genetic elements. The plot is suitable  for publication, record  keeping, or  analysis. It is drawn  from one or more labeling files such as those written by MapSort.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>plasmidmap</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp plasmidmap</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/plasmidmap.html">http://bioweb.pasteur.fr/docs/gcg/plasmidmap.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GRUPPI><i>gruppi</i> (7) 	<dd>	The program gives the list of clusters of binding  sites (at least 2 sites in max 300 bp) whose score is  above the threshold specified in a matrix file.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>gruppi</td>      	<td><A HREF="/docs/man/doc/gruppi.1">man gruppi</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/gruppi-simple.html">gruppi</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/gruppi//">/local/gensoft/doc/gruppi/</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>You can find matrices in /local/gensoft/lib/gruppi/matrices</td>       </tr>         </table>  	<p>  	<dt>	<a name=MATINSPECTOR><i>MatInspector</i> (2.2) 	<dd>	MatInd/MatInspector. MatInspector recherche des sites de liaison dans une squence d'acides  nucliques. Il utilise la description gnre par le programme MatInd.   Voir aussi : <a href="gensoft-na.html#CONSINSPECTOR">ConsInspector</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>matind</td>      	<td><A HREF="/docs/man/doc/matind.1">man matind</a></td>    	</tr>  	<tr>    	<td>matinspector</td>      	<td><A HREF="/docs/man/doc/matinspector.1">man matinspector</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.gsf.de/biodv/matinspector.html">http://www.gsf.de/biodv/matinspector.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=PROMOTERSCAN><i>PROMOTER SCAN</i>  	<dd>	Recherche de squences promoteurs Pol II dans une squence.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>proscan</td>      	<td><A HREF="/docs/man/doc/proscan.1">man proscan</a></td>    	</tr>  	</table>  	<p>  	<dt>	<a name=REPEATMASKER><i>RepeatMasker</i> (07262001) 	<dd>	A program that screens DNA sequences for low complexity DNA sequences and interspersed repeats.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>RepeatMasker</td>      	<td><A HREF="/docs/man/doc/RepeatMasker.1">man RepeatMasker</a></td>    	</tr>  	<tr>    	<td>rm2gb</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/RepeatMasker-simple.html">RepeatMasker</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>rm2gb extracts repeats as Genbank formatted  annotations.</td>       </tr>         </table>  	<p>  	<dt>	<a name=REPUTER><i>reputer</i> (2) 	<dd>	Fast Computation of Maximal Repeats in Complete Genomes   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>reputer</td>      	<td><A HREF="/docs/man/doc/reputer.1">man reputer</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/reputer-simple.html">reputer</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/reputer//">/local/gensoft/doc/reputer/</a></td></tr>      	<tr><td><A HREF="http://bibiserv.techfak.uni-bielefeld.de/reputer/">http://bibiserv.techfak.uni-bielefeld.de/reputer/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=RESTMAP><i>RESTMAP</i> (May, 1992) 	<dd>	Cartes de restriction.   Voir aussi : <a href="gensoft-na.html#TACG">TACG</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>mapc</td>    	</tr>  	<tr>    	<td>mapl</td>    	</tr>  	<tr>    	<td>diged</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td><A HREF="/docs/man/doc/restmap.1">man restmap</a></td></tr>    	</table>  	<p>  	<dt>	<a name=SCAN_FOR_MATCHES><i>scan_for_matches</i>  	<dd>	Recherche de motifs dans des squences d'ADN ou de protines.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>show_hits</td>    	</tr>  	<tr>    	<td>scan_for_matches</td>      	<td><A HREF="/docs/man/doc/scan_for_matches.1">man scan_for_matches</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/scan_for_matches//">/local/gensoft/doc/scan_for_matches/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=SIGNALSCAN><i>SIGNALSCAN</i> (4.07) 	<dd>	Analyse des signaux dans les squences ADN eukaryotes : facteurs de transcription (banques  TFD, TRANSFAC et IMD).   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>sigscan</td>      	<td><A HREF="/docs/man/doc/sigscan.1">man sigscan</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/sigscan//">/local/gensoft/doc/sigscan/</a></td></tr>      	<tr><td><A HREF="http://biosci.cbs.umn.edu/software/sigscan.html">http://biosci.cbs.umn.edu/software/sigscan.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=TACG><i>TACG</i> (2.391) 	<dd>	Recherche de sites d'enzymes de restriction dans une squence.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>tacg</td>      	<td><A HREF="/docs/man/man/tacg.1.html">man tacg</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/tacg.html">TACG</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/tacg/tacg2.main.html">http://bioweb.pasteur.fr/docs/tacg/tacg2.main.html</a></td></tr>    	</table>  	<p>  </dl> <p>  <li>	<a name=ACIDESNUCLIQUESCONCEPTIONETSYNTHSED'AMORCES><h2>Conception et Synthse d'Amorces</h2> <p> <dl>  	<dt>	<a name=GCGPRIME><i>GCG Prime</i>  	<dd>	Prime selects  oligonucleotide primers for  a  template DNA sequence. The primers may be  useful for the polymerase chain reaction (PCR) or for DNA sequencing.  You can allow Prime to choose  primers from  the whole template or  limit the  choices to  a particular set of primers  listed in a file.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>prime</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp prime</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/prime.html">http://bioweb.pasteur.fr/docs/gcg/prime.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=MELTING><i>MELTING</i> (4.2d) 	<dd>	This program computes for an oligonucleotide, the  enthalpie, the entropy and the melting temperature  of the binding to its complementary template.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>melting</td>      	<td><A HREF="/docs/man/doc/melting.1">man melting</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/melting.html">MELTING</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.pasteur.fr/recherche/unites/neubiomol/meltinghome.html">http://www.pasteur.fr/recherche/unites/neubiomol/meltinghome.html</a></td></tr>      	<tr><td><A HREF="/docs/melting/">http://bioweb.pasteur.fr/docs/melting/</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/MELTING//">/local/gensoft/doc/MELTING/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=PRIMER0.5><i>primer0.5</i> (0.5) 	<dd>	Selection d'amorces pour PCR.   Voir aussi : <a href="#PRIMO">PRIMO</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>primer0.5</td>      	<td><A HREF="/docs/man/doc/primer0.5.1">man primer0.5</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/primer_0.5/manual.asc">/local/gensoft/doc/primer_0.5/manual.asc</a></td></tr>    	</table>  	<p>  	<dt>	<a name=PRIMER3><i>primer3</i> (3_0_9) 	<dd>	Selection d'amorces pour PCR.     	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>primer3</td>      	<td><A HREF="/docs/man/doc/primer3.1">man primer3</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="http://www.genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi">primer3</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/primer3/example">/local/gensoft/doc/primer3/example</a></td></tr>    	</table>  	<p>  	<dt>	<a name=PRIMO><i>primo</i> (1) 	<dd>	Conception de primers. Inspir de primer0.5 du MIT.  Voir aussi : <a href="#PRIMER0.5">PRIMER0.5</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>primo</td>      	<td><A HREF="/docs/man/doc/primo.1">man primo</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/primo.html">primo</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/primo/example//">/local/gensoft/doc/primo/example/</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>The environment variable : PRIMER_DEFAULTS may be set to a directory containing custom oligo.screen and human.rep files (see the example directory).</td>       </tr>         </table>  	<p>  </dl> <p>  <li>	<a name=ACIDESNUCLIQUESDCOUVERTEDEMOTIFS><h2>Dcouverte de Motifs</h2> <p> <dl>  	<dt>	<a name=ALICE><i>Alice</i>  	<dd>	Motif discovery. The light version (-t) does not allow gaps.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>alice_nuc</td>    	</tr>  	<tr>    	<td>alice_nuc -t</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>alice_nuc -h</td></tr>      	<tr><td>alice_nuc -t -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Beta version.</td>       </tr>         </table>  	<p>  	<dt>	<a name=CONSENSUS><i>consensus</i> (1.9e) 	<dd>	Identification of consensus patterns in unaligned DNA and protein sequences (G.Z. Hertz).   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>con-filter</td>    	</tr>  	<tr>    	<td>consensus</td>      	<td><A HREF="/docs/man/doc/consensus.1">man consensus</a></td>    	</tr>  	<tr>    	<td>fasta-consensus</td>    	</tr>  	<tr>    	<td>gcg-consensus</td>    	</tr>  	<tr>    	<td>genbank-consensus</td>    	</tr>  	<tr>    	<td>gmat-inf-gc</td>    	</tr>  	<tr>    	<td>make-matrix</td>    	</tr>  	<tr>    	<td>p-value</td>    	</tr>  	<tr>    	<td>patser</td>    	</tr>  	<tr>    	<td>rand-seqs</td>    	</tr>  	<tr>    	<td>seq-modifier</td>    	</tr>  	<tr>    	<td>wconsensus</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>patser -h</td></tr>      	<tr><td>patser -help</td></tr>      	<tr><td>wconsensus -h</td></tr>      	<tr><td>wconsensus -help</td></tr>      	<tr><td>p-value -h</td></tr>      	<tr><td>consensus -h</td></tr>      	<tr><td>consensus -help</td></tr>      	<tr><td>gcg-consensus -h</td></tr>      	<tr><td>con-filter -h</td></tr>      	<tr><td>con-filter -help</td></tr>      	<tr><td>fasta-consensus -h</td></tr>      	<tr><td>make-matrix -h</td></tr>      	<tr><td>gmat-inf-gc -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/consensus-simple.html">consensus</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/consensus/">/local/gensoft/doc/consensus</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>consensus-matrix (home made) may help you to extract the matrix from the (w)consensus output</td>       </tr>         </table>  	<p>  	<dt>	<a name=CORESEARCH><i>CoreSearch</i> (1.3) 	<dd>	Identification d'lments consensus dans un ensemble de squences d'ADN non alignes.   Voir aussi : <a href="gensoft-na.html#CONSINSPECTOR">ConsInspector</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>coresearch</td>      	<td><A HREF="/docs/man/doc/coresearch.1">man coresearch</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.gsf.de/biodv/coresearch.html">http://www.gsf.de/biodv/coresearch.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GCGCOMPOSITION><i>GCG Composition</i>  	<dd>	Composition determines the composition of sequence(s). For  nucleotide sequence(s), Composition also determines dinucleotide and trinucleotide content.     	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>composition</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp composition</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/composition.html">http://bioweb.pasteur.fr/docs/gcg/composition.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGCONSENSUS><i>GCG Consensus</i>  	<dd>	Consensus calculates a consensus sequence for a set of  pre-aligned short nucleic acid sequences by tabulating the percent of G, A, T, and C for each position in the set. FitConsensus uses the Consensus output table as a probe to search for the best examples of the derived consensus in other nucleotide sequences.      	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>consensus</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp consensus</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/consensus.html">http://bioweb.pasteur.fr/docs/gcg/consensus.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGFINDPATTERNS><i>GCG FindPatterns</i>  	<dd>	FindPatterns identifies sequences that contain short  patterns like GAATTC or YRYRYRYR. You can define the  patterns ambiguously and allow mismatches. You can provide the patterns in a file or simply type them in from the terminal.      	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>findpatterns</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp findpatterns</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/findpatterns.html">http://bioweb.pasteur.fr/docs/gcg/findpatterns.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable </td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGFITCONSENSUS><i>GCG FitConsensus</i>  	<dd>	FitConsensus uses a consensus table written by Consensus as  a probe to find the best examples of the consensus in a DNA sequence. You can specify the number of fits you  want to see, and FitConsensus tabulates them with their position, frame, and a statistical measure of their  quality.   Voir aussi : <a href="gensoft-na.html#GCGCONSENSUS">GCG Consensus</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>fitconsensus</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp fitconsensus</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/fitconsensus.html">http://bioweb.pasteur.fr/docs/gcg/fitconsensus.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGREPEAT><i>GCG Repeat</i>  	<dd>	Repeat finds direct repeats in sequences. You must set the  size, stringency, and range within which the repeat must occur; all the repeats of that size or greater are  displayed as short alignments.     	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>repeat</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp repeat</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/repeat.html">http://bioweb.pasteur.fr/docs/gcg/repeat.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable </td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGSTATPLOT><i>GCG StatPlot</i>  	<dd>	StatPlot plots a set of parallel curves from a table of  numbers like the table written by the Window program. The statistics in each column of the table are associated  with a position in the analyzed sequence.     	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>statPlot</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp statPlot</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/statplot.html">http://bioweb.pasteur.fr/docs/gcg/statplot.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGWINDOW><i>GCG Window</i>  	<dd>	Window makes a table of the frequencies of different  sequence patterns within a window as it is moved along a sequence. A pattern is any short sequence like GC or R or  ATG. You can plot the output with the program StatPlot.  Voir aussi : <a href="gensoft-na.html#GCGSTATPLOT">GCG StatPlot</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>window</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp window</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/window.html">http://bioweb.pasteur.fr/docs/gcg/window.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=MEME><i>MEME</i> (3.0.3) 	<dd>	Multiple EM for Motif Elicitation. Dcouverte de motifs dans un groupe de squences relatives (ADN ou protines). Recherche de ces motifs dans les banques.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>meme</td>      	<td><A HREF="/docs/man/man/meme.1.html">man meme</a></td>    	</tr>  	<tr>    	<td>mast</td>      	<td><A HREF="/docs/man/doc/mast.1">man mast</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/motif/meme/">MEME</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/meme/tests/">/local/gensoft/doc/meme/tests/</a></td></tr>      	<tr><td><A HREF="http://central.pasteur.fr/seqanal/motif/meme/meme-intro.html">http://central.pasteur.fr/seqanal/motif/meme/meme-intro.html</a></td></tr>      	<tr><td><A HREF="http://central.pasteur.fr/seqanal/motif/meme/mast-intro.html">http://central.pasteur.fr/seqanal/motif/meme/mast-intro.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=MREPS><i>mreps</i> (2.1) 	<dd>	Identification de repetitions contigues dans les sequences nucleiques.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>mreps</td>      	<td><A HREF="/docs/man/doc/mreps.1">man mreps</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/mreps.html">mreps</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/mreps/">/local/gensoft/doc/mreps</a></td></tr>      	<tr><td><A HREF="http://www.loria.fr/~kucherov/software/mreps/">http://www.loria.fr/~kucherov/software/mreps/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=PALINGOL><i>PALINGOL</i> (1.3) 	<dd>	Un langage de programmation spcialis pour la  description de structures secondaires d'ADN.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>palamou</td>    	</tr>  	<tr>    	<td>galopin</td>      	<td><A HREF="/docs/man/doc/galopin.1">man galopin</a></td>    	</tr>  	<tr>    	<td>palingol</td>      	<td><A HREF="/docs/man/doc/palingol.1">man palingol</a></td>    	</tr>  	<tr>    	<td>galopin_main</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/palingol/doc//">/local/gensoft/doc/palingol/doc/</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/palingol/samples//">/local/gensoft/doc/palingol/samples/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=REPEATS><i>repeats</i> (1.1) 	<dd>	Trouve des motifs d'une taille allant de 1  32 nuclotides,  rpts en tandem, dans des squences d'acides nucliques.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>repeats</td>      	<td><A HREF="/docs/man/doc/repeats.1">man repeats</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/repeats.html">repeats</a></td></tr>    	</table>  	<p>  	<dt>	<a name=SATELLITES><i>satellites</i> (0.2) 	<dd>	Identifying satellites and periodic repetitions  in biological sequences.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>sat</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td><A HREF="/docs/man/doc/satellites.1">man satellites</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/satellites.html">satellites</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/satellites//">/local/gensoft/doc/satellites/</a></td></tr>      	<tr><td><A HREF="http://www-igm.univ-mlv.fr/~sagot/publications/satellites/jcb.ps">http://www-igm.univ-mlv.fr/~sagot/publications/satellites/jcb.ps</a></td></tr>    	</table>  	<p>  </dl> <p>  <li>	<a name=ACIDESNUCLIQUESANALYSED'ARN><h2>Analyse d'ARN</h2> <p> <dl>  	<dt>	<a name=COVE><i>COVE</i> (2.4.4) 	<dd>	Modles de covariance de familles d'ARN : gnration de modles (covet), alignement (covea), recherche dans une banque (covels), prdiction d'une structure (coves).   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>covea</td>    	</tr>  	<tr>    	<td>coveb</td>    	</tr>  	<tr>    	<td>covee</td>    	</tr>  	<tr>    	<td>covels</td>    	</tr>  	<tr>    	<td>coves</td>    	</tr>  	<tr>    	<td>covet</td>    	</tr>  	<tr>    	<td>structcheck</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td><A HREF="/docs/man/doc/cove.1">man cove</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/cove/Guide.ps">/local/gensoft/doc/cove/Guide.ps</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/cove/Demos/">/local/gensoft/doc/cove/Demos</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/cove/RNA_cove_models.ps">/local/gensoft/doc/cove/RNA_cove_models.ps</a></td></tr>    	</table>  	<p>  	<dt>	<a name=FASTRNA><i>FAStRNA</i> (1) 	<dd>	Predicts potential tRNA genes in genomic DNA sequences. FAStRNA-CM relies on a probabilistic model. FAStRNA-CLASS relies on a pattern-matching approach.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>    	</tr>  	<tr>    	<td>FAStRNA-CM</td>    	</tr>  	<tr>    	<td>FAStRNA-CLASS</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/fastrna.html">FAStRNA</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/FAStRNA/readme.ps">/local/gensoft/doc/FAStRNA/readme.ps</a></td></tr>      	<tr><td><A HREF="http://www-igm.univ-mlv.fr/~mabrouk/">http://www-igm.univ-mlv.fr/~mabrouk/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GCGMFOLD><i>GCG MFold</i>  	<dd>	MFold predicts optimal and suboptimal secondary structures for an RNA molecule using the most recent energy minimization method of Zuker.   Voir aussi : <a href="gensoft-na.html#GCGPLOTFOLD">GCG PlotFold</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>mfold</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp mfold</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/mfold.html">http://bioweb.pasteur.fr/docs/gcg/mfold.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGPLOTFOLD><i>GCG PlotFold</i>  	<dd>	PlotFold displays the optimal and suboptimal secondary structures for an RNA molecule predicted by MFold.   Voir aussi : <a href="gensoft-na.html#GCGMFOLD">GCG MFold</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>plotfold</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp plotfold</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/plotfold.html">http://bioweb.pasteur.fr/docs/gcg/plotfold.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGSTEMLOOP><i>GCG StemLoop</i>  	<dd>	StemLoop  finds  stems  (inverted repeats)  within  a  sequence.  You specify the minimum stem length,  minimum and maximum loop sizes, and the  minimum number of  bonds  per stem.  All loops or only  the best loops can be displayed on your screen or written into a file.  Voir aussi : <a href="gensoft-algt.html#GCGDOTPLOT">GCG DotPlot</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>stemloop</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp stemloop</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/stemloop.html">http://bioweb.pasteur.fr/docs/gcg/stemloop.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGTERMINATOR><i>GCG Terminator</i>  	<dd>	Terminator searches for prokaryotic factor-independent RNA polymerase terminators according to the     method of Brendel and Trifonov.     	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>terminator</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp terminator</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/terminator.html">http://bioweb.pasteur.fr/docs/gcg/terminator.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable </td>       </tr>         </table>  	<p>  	<dt>	<a name=MFOLD><i>MFOLD</i> (2.3) 	<dd>	Prediction of RNA secondary structure by Energy Minimization (Zuker).   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>mfold</td>      	<td><A HREF="/docs/man/doc/mfold.1">man mfold</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/mfold-simple.html">MFOLD</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/mfold/doc/manual.ps">/local/gensoft/doc/mfold/doc/manual.ps</a></td></tr>      	<tr><td><A HREF="http://www.bioinfo.rpi.edu/applications/mfold/">http://www.bioinfo.rpi.edu/applications/mfold/</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>There are a lot of other Unix commands for mfold not listed here for simplicity.</td>       </tr>         </table>  	<p>  	<dt>	<a name=RNABOB><i>RNABOB</i> (2.1) 	<dd>	Recherche de motifs d'ARN dans une banque de squences.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>rnabob</td>      	<td><A HREF="/docs/man/man/rnabob.1.html">man rnabob</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/rnabob/rnabob.ps">/local/gensoft/doc/rnabob/rnabob.ps</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/rnabob//">/local/gensoft/doc/rnabob/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=RNAGA><i>rnaga</i> (1) 	<dd>	Prediction of common secondary structures of RNAs by genetic algorithm   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>rnaga</td>      	<td><A HREF="/docs/man/doc/rnaga.1">man rnaga</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/rnaga.html">rnaga</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/rnaga/">/local/gensoft/doc/rnaga</a></td></tr>    	</table>  	<p>  	<dt>	<a name=TRNASCANSE><i>tRNAscan-SE</i> (1.23) 	<dd>	Dtection d'ARN de transfert dans une squence gnomique. Trois mthodes sont combines pour affiner la recherche : cove, tRNAscan et EufindtRNA.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>tRNAscan-SE</td>      	<td><A HREF="/docs/man/man/tRNAscan-SE.1.html">man tRNAscan-SE</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/trnascan-simple.html">tRNAscan-SE</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/tRNAscan-SE//">/local/gensoft/doc/tRNAscan-SE/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=VIENNARNA><i>ViennaRNA</i> (1.4) 	<dd>	Vienna RNA package. Secondary structure prediction  and comparaison. Inverse folding, melting temperature  and energy calculation. RNAlib: library of functions for programmers.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>RNAfold</td>      	<td><A HREF="/docs/man/man/RNAfold.1.html">man RNAfold</a></td>    	</tr>  	<tr>    	<td>RNAeval</td>      	<td><A HREF="/docs/man/man/RNAeval.1.html">man RNAeval</a></td>    	</tr>  	<tr>    	<td>RNAheat</td>      	<td><A HREF="/docs/man/man/RNAheat.1.html">man RNAheat</a></td>    	</tr>  	<tr>    	<td>RNAinverse</td>      	<td><A HREF="/docs/man/man/RNAinverse.1.html">man RNAinverse</a></td>    	</tr>  	<tr>    	<td>RNAdistance</td>      	<td><A HREF="/docs/man/man/RNAdistance.1.html">man RNAdistance</a></td>    	</tr>  	<tr>    	<td>RNApdist</td>      	<td><A HREF="/docs/man/man/RNApdist.1.html">man RNApdist</a></td>    	</tr>  	<tr>    	<td>AnalyseDists</td>      	<td><A HREF="/docs/man/man/AnalyseDists.1.html">man AnalyseDists</a></td>    	</tr>  	<tr>    	<td>AnalyseSeqs</td>      	<td><A HREF="/docs/man/man/AnalyseSeqs.1.html">man AnalyseSeqs</a></td>    	</tr>  	<tr>    	<td>RNAsubopt</td>      	<td><A HREF="/docs/man/man/RNAsubopt.1.html">man RNAsubopt</a></td>    	</tr>  	<tr>    	<td>popt</td>    	</tr>  	<tr>    	<td>RNAplot</td>    	</tr>  	<tr>    	<td>b2ct</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>man ViennaRNA</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/rna/">ViennaRNA</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/ViennaRNA/">/local/gensoft/doc/ViennaRNA</a></td></tr>      	<tr><td><A HREF="http://www.ks.uiuc.edu/~ivo/RNA/">http://www.ks.uiuc.edu/~ivo/RNA/</a></td></tr>      	<tr><td><A HREF="/docs/ViennaRNA/RNAlib.html">http://bioweb.pasteur.fr/docs/ViennaRNA/RNAlib.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>See /local/gensoft/include/ViennaRNA for header files (Vienna package library users only). See /local/gensoft/doc/ViennaRNA/Perl for an example of the perl RNA module use.</td>       </tr>         </table>  	<p>  </dl> <p>  <li>	<a name=ACIDESNUCLIQUESRECHERCHEDEGNES,TRADUCTION,RGIONSCODANTES><h2>Recherche de Gnes, Traduction, Rgions codantes</h2> <p> <dl>  	<dt>	<a name=CDS><i>CDS</i> (1) 	<dd>	Recherche de rgions codantes.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>cds</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>cds -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/cds-simple.html">CDS</a></td></tr>    	</table>  	<p>  	<dt>	<a name=CODONTREE><i>CODONTREE</i> (1.1) 	<dd>	Analyse des proprits de rgions codantes : usage  des codons, composition en bases, matrice de distances.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>codontree</td>      	<td><A HREF="/docs/man/doc/codontree.1">man codontree</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/codontree.html">CODONTREE</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/codontree//">/local/gensoft/doc/codontree/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=CODONW><i>CodonW</i> (1.4.2) 	<dd>	CodonW is a package for codon usage analysis. Multivariate Analysis (MVA) of codon usage.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>codonw</td>      	<td><A HREF="/docs/man/doc/codonw.1">man codonw</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>codonw -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/codonw.html">CodonW</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/codonW/">/local/gensoft/doc/codonW</a></td></tr>      	<tr><td><A HREF="http://www.molbiol.ox.ac.uk/cu/">http://www.molbiol.ox.ac.uk/cu/</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>Un fichier de donnes pour test est disponible:  /local/gensoft/doc/codonW/input.dat</td>       </tr>         </table>  	<p>  	<dt>	<a name=DIANA><i>Diana</i>  	<dd>	Analyse d'ADN, recherche de gnes.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>  	</tr>  	<tr>  	</tr>  	</table>  	<p>  	<dt>	<a name=GCGCODONFREQUENCY><i>GCG CodonFrequency</i>  	<dd>	CodonFrequency tabulates codon usage from sequences and/or  existing codon usage tables. The output file is correctly  formatted for input to the CodonPreference, Correspond, and Frames programs.    Voir aussi : <a href="gensoft-na.html#GCGCODONPREFERENCE">GCG CodonPreference</a>, <a href="gensoft-na.html#GCGCORRESPOND">GCG Correspond</a>, <a href="gensoft-na.html#GCGFRAMES">GCG Frames</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>codonfrequency</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp codonfrequency</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/codonfrequency.html">http://bioweb.pasteur.fr/docs/gcg/codonfrequency.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGCODONPREFERENCE><i>GCG CodonPreference</i>  	<dd>	CodonPreference is a frame-specific gene finder that tries  to recognize protein coding sequences by virtue of the  similarity of their codon usage to a codon frequency table or by the bias of their composition (usually GC) in the third position of each codon.    Voir aussi : <a href="gensoft-na.html#GCGCODONFREQUENCY">GCG CodonFrequency</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>codonpreference</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp codonpreference</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/codonpreference.html">http://bioweb.pasteur.fr/docs/gcg/codonpreference.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable </td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGCORRESPOND><i>GCG Correspond</i>  	<dd>	Correspond looks for similar patterns of codon usage by  comparing codon frequency tables.    Voir aussi : <a href="gensoft-na.html#GCGCODONFREQUENCY">GCG CodonFrequency</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>correspond</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp correspond</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/correspond.html">http://bioweb.pasteur.fr/docs/gcg/correspond.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGFRAMES><i>GCG Frames</i>  	<dd>	Frames shows open reading frames for the six translation  frames of a DNA sequence. Frames can superimpose the pattern of rare codon choices if you provide it with a  codon frequency table.    Voir aussi : <a href="gensoft-na.html#GCGCODONFREQUENCY">GCG CodonFrequency</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>frames</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp frames</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/frames.html">http://bioweb.pasteur.fr/docs/gcg/frames.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable </td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGMAP><i>GCG Map</i>  	<dd>	Map maps a DNA sequence and displays both strands of the mapped sequence with restriction enzyme cut points above the sequence and protein translations below. Map can also create a peptide map of an amino acid sequence.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>map</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp map</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/map.html">http://bioweb.pasteur.fr/docs/gcg/map.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGPEPDATA><i>GCG PepData</i>  	<dd>	PepData translates DNA sequence(s) in all six frames.    	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>pepdata</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp pepdata</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/pepdata.html">http://bioweb.pasteur.fr/docs/gcg/pepdata.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGTESTCODE><i>GCG TestCode</i>  	<dd>	TestCode helps you identify protein coding sequences by  plotting a measure of the non-randomness of the composition at every third base. The statistic does not  require a codon frequency table.     	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>testcode</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp testcode</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/testcode.html">http://bioweb.pasteur.fr/docs/gcg/testcode.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable </td>       </tr>         </table>  	<p>  	<dt>	<a name=GCGTRANSLATE><i>GCG Translate</i>  	<dd>	Translate translates nucleotide sequences into peptide sequences.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>translate</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>genhelp translate</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/gcg/translate.html">http://bioweb.pasteur.fr/docs/gcg/translate.html</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>lancer gcg au pralable</td>       </tr>         </table>  	<p>  	<dt>	<a name=GENEMARK><i>GeneMark</i> (2.4b) 	<dd>	Locate genes within a DNA sequence.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>gm</td>      	<td><A HREF="/docs/man/man/gm.1.html">man gm</a></td>    	</tr>  	<tr>    	<td>gc</td>      	<td><A HREF="/docs/man/man/gc.1.html">man gc</a></td>    	</tr>  	<tr>    	<td>matinfo</td>      	<td><A HREF="/docs/man/man/matinfo.1.html">man matinfo</a></td>    	</tr>  	<tr>    	<td>viewmat</td>      	<td><A HREF="/docs/man/man/viewmat.1.html">man viewmat</a></td>    	</tr>  	<tr>    	<td>mkmat</td>      	<td><A HREF="/docs/man/man/mkmat.1.html">man mkmat</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/genemark-simple.html">GeneMark</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://opal.biology.gatech.edu/GeneMark/">http://opal.biology.gatech.edu/GeneMark/</a></td></tr>      	<tr><td><A HREF="/docs/genemark/Manual.html">http://bioweb.pasteur.fr/docs/genemark/Manual.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GENEMARK.HMM><i>GeneMark.hmm</i> (2.2) 	<dd>	GeneMark.hmm: locates genes within a DNA sequence   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>gmhmme</td>      	<td><A HREF="/docs/man/man/gmhmme.1.html">man gmhmme</a></td>    	</tr>  	<tr>    	<td>gmhmmp</td>      	<td><A HREF="/docs/man/man/gmhmmp.1.html">man gmhmmp</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://opal.biology.gatech.edu/GeneMark/">http://opal.biology.gatech.edu/GeneMark/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GENEPARSER><i>GeneParser</i> (2.03) 	<dd>	Identification de gnes.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>gp.csh</td>      	<td><A HREF="/docs/man/man/gp.csh.1.html">man gp.csh</a></td>    	</tr>  	<tr>    	<td>gp</td>      	<td><A HREF="/docs/man/man/gp.1.html">man gp</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td>/local/gensoft/lib/geneparser/</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>gp.csh rend l'utilisation plus facile. Ce programme est  un stade relativement exprimental.</td>       </tr>         </table>  	<p>  	<dt>	<a name=GENOMEINSPECTOR><i>GenomeInspector</i> (1.0) 	<dd>	Analyse de chromosomes (ORF, facteurs de transcription, ... corrlations entre rgions).[X11]   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>GenomeInspector</td>      	<td><A HREF="/docs/man/doc/GenomeInspector.1">man GenomeInspector</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.gsf.de/biodv/genomeinspector.html">http://www.gsf.de/biodv/genomeinspector.html</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/GenomeInspector//">/local/gensoft/doc/GenomeInspector/</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/GenomeInspector/example_data/">/local/gensoft/doc/GenomeInspector/example_data</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/GenomeInspector/example_ps/">/local/gensoft/doc/GenomeInspector/example_ps</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GENSCAN><i>GENSCAN</i> (1.0) 	<dd>	A general-purpose gene identification program which analyzes genomic DNA sequences from a variety of organisms including human, other vertebrates, invertebrates and plants.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>genscan</td>      	<td><A HREF="/docs/man/doc/genscan.1">man genscan</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/genscan-simple.html">GENSCAN</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://genes.mit.edu/GENSCAN.html">http://genes.mit.edu/GENSCAN.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GFF2PS><i>gff2ps</i> (0.94) 	<dd>	Converting gff-formated genomic data-sets to  PostScript.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>gff2ps</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>gff2ps -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/gff2ps.html">gff2ps</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/gff2ps/">/local/gensoft/doc/gff2ps</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GLIMMER><i>GLIMMER</i> (2.02) 	<dd>	(Gene Locator and Interpolated Markov Modeler) Finding genes in microbial DNA.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>build-icm</td>      	<td><A HREF="/docs/man/doc/build-icm.1">man build-icm</a></td>    	</tr>  	<tr>    	<td>glimmer-extract</td>      	<td><A HREF="/docs/man/doc/glimmer-extract.1">man glimmer-extract</a></td>    	</tr>  	<tr>    	<td>glimmer</td>      	<td><A HREF="/docs/man/doc/glimmer.1">man glimmer</a></td>    	</tr>  	<tr>    	<td>long-orfs</td>      	<td><A HREF="/docs/man/doc/long-orfs.1">man long-orfs</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/genes/glimmer-fr.html">GLIMMER</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.cs.jhu.edu/labs/compbio/glimmer.html">http://www.cs.jhu.edu/labs/compbio/glimmer.html</a></td></tr>      	<tr><td><A HREF="http://www.oup.co.uk/nar/Volume_26/Issue_02/html/gkb128_gml.html">http://www.oup.co.uk/nar/Volume_26/Issue_02/html/gkb128_gml.html</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/glimmer/">/local/gensoft/doc/glimmer</a></td></tr>      	<tr><td><A HREF="http://www.tigr.org/softlab/glimmer/glimmer.html">http://www.tigr.org/softlab/glimmer/glimmer.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=GRAILCLNT><i>GRAILCLNT</i> (1.3) 	<dd>	Recherche de rgions codantes, modles de gnes, traductions, sites fonctionnels, rptitions (interface ligne de commande).   Voir aussi : <a href="gensoft-na.html#XGRAIL">XGRAIL</a>, <a href="#NETGRAIL">NETGRAIL</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>grailclnt</td>      	<td><A HREF="/docs/man/doc/grailclnt.1">man grailclnt</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/xgrail/grailclnt//">/local/gensoft/doc/xgrail/grailclnt/</a></td></tr>      	<tr><td><A HREF="http://grail.lsd.ornl.gov/manuals/grail1.3-genquest.9605.shtml">http://grail.lsd.ornl.gov/manuals/grail1.3-genquest.9605.shtml</a></td></tr>      	<tr><td><A HREF="http://compbio.ornl.gov/Grail-1.3">http://compbio.ornl.gov/Grail-1.3</a></td></tr>      	<tr><td><A HREF="http://compbio.ornl.gov/grailexp">http://compbio.ornl.gov/grailexp</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>  	<td><i>Remarques</i></td>  	</tr>          <tr>  	<td>The GRAIL email server has been discontinued.</td>       </tr>         </table>  	<p>  	<dt>	<a name=MORGAN><i>MORGAN</i> (1997) 	<dd>	Finding genes in eukaryotic DNA sequences.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>morgan</td>      	<td><A HREF="/docs/man/doc/morgan.1">man morgan</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/morgan-simple.html">MORGAN</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://www.cs.jhu.edu/labs/compbio/morgan.html">http://www.cs.jhu.edu/labs/compbio/morgan.html</a></td></tr>    	</table>  	<p>  	<dt>	<a name=NETGRAIL><i>netgrail</i> (0.03) 	<dd>	A simple perl client used to create valid requests to the  GRAIL server.  Voir aussi : <a href="gensoft-na.html#XGRAIL">XGRAIL</a>, <a href="gensoft-na.html#GRAILCLNT">GRAILCLNT</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>netgrail</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Aide en ligne Unix complmentaire</i></td>   	</tr>    	<tr><td>netgrail -h</td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="http://compbio.ornl.gov/Grail-1.3/help/">http://compbio.ornl.gov/Grail-1.3/help/</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/netgrail//">/local/gensoft/doc/netgrail/</a></td></tr>    	</table>  	<p>  	<dt>	<a name=TRANSLATE><i>TRANSLATE</i>  	<dd>	Traduction d'ADN.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>translate</td>      	<td><A HREF="/docs/man/man/translate.1.html">man translate</a></td>    	</tr>  	</table>  	<p>  	<dt>	<a name=XGRAIL><i>XGRAIL</i> (1.3c) 	<dd>	Recherche de rgions codantes, modles de gnes, traductions, sites fonctionnels, rptitions. [X11]  Voir aussi : <a href="gensoft-na.html#GRAILCLNT">GRAILCLNT</a>, <a href="#NETGRAIL">NETGRAIL</a>.   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>xgrail</td>      	<td><A HREF="/docs/man/doc/xgrail.1">man xgrail</a></td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/xgrail/grail.publ">/local/gensoft/doc/xgrail/grail.publ</a></td></tr>      	<tr><td><A HREF="/docs/doc-gensoft/xgrail/orgseqs//">/local/gensoft/doc/xgrail/orgseqs/</a></td></tr>      	<tr><td><A HREF="http://grail.lsd.ornl.gov/manuals/grail1.3-genquest.9605.shtml">http://grail.lsd.ornl.gov/manuals/grail1.3-genquest.9605.shtml</a></td></tr>    	</table>  	<p>  	<dt>	<a name=XPOUND><i>xpound</i> (01/95) 	<dd>	Probabilistic model for detecting coding regions in DNA sequences   	<table border=1 cellpadding=3 cellspacing=1 width=80%>  	<tr>    	<td><i>Commandes Unix</i></td>      	<td><i>Aide en ligne Unix</i></td>    	</tr>  	<tr>    	<td>xpound</td>      	<td><A HREF="/docs/man/doc/xpound.1">man xpound</a></td>    	</tr>  	<tr>    	<td>xreport</td>    	</tr>  	<tr>    	<td>xpscript</td>    	</tr>  	<tr>    	<td>xtrain</td>    	</tr>  	<tr>    	<td>xspec</td>    	</tr>  	<tr>    	<td>xshow</td>    	</tr>  	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Serveur</i></td>   	</tr>    	<tr><td><A HREF="/seqanal/interfaces/xpound-simple.html">xpound</a></td></tr>    	</table>  	<table border=1 cellpadding=3 cellspacing=1 width=80%> 	<tr>   	<td><i>Documents</i></td>   	</tr>    	<tr><td><A HREF="/docs/doc-gensoft/xpound//">/local/gensoft/doc/xpound/</a></td></tr>    	</table>  	<p>  </dl> <p>  </ul> <p>  </BODY> </HTML> 
