Protein PF07_0047 (PlasmoDB link) - New domain CDC48_N (Pfam link)

Sequence and domain localizations (colored) at: 350...425 

   1 MKVRKMHYPLFSFTEYLSCYIILYFFVFLPNYSYAININNYHNKNNLWNINNKWNNQQSN   60
  61 HFSNNRIGHFLWGSKIRKNPLASISTSITTKKLENQKKKTNKNESYSNVNDKYEHNNNTA  120
 121 HFVQINYKNDQSNDTLSTYKNNNEMTVEGKPNNLASGEGKKEIHNTTQKILEKVDYFKER  180
 181 EKITNSYNNNNNNNKVIVTHDNKNHTNYINKVENKQSDDKIKNLNNKYIKKFKSHILQND  240
 241 ILGTISTMFWSGKKNNNGNVKKGIKNVPMDEKSYSPNDHDNNSNNSNNNNNNDNNNSNNN  300
 301 NNNNNGGKNNSYYNEKTQKGVNDKETNFLLKALDSGKFPTYCLVENIDENLDNFDIYMSK  360
 361 EKMDELNINDGATVLLKGKKKREMLGIARLDRSLKKHYVVISFAMKKNLRLMHNDIIKIH  420
 421 PFMNAKRIRNVVLSPFSDTIPNLSREELEKAVIHPYLKNSYKPLRVNSNIYIYYKNNKIE  480
 481 FKVLKIISEESENEEFGCIGEHSQLTLAEEYLKREDYEENNDDITYEDLGGMKKQLNKIR  540
 541 ELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSK  600
 601 HIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKK  660
 661 NNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLR  720
 721 KIAKECHGYVGADLAQLCFEAAIQCIKEHIHFLDLDEEDFIEFMKISVDEDKKNMGNEPY  780
 781 GSSHTNNSNYINHLTESSNKLSYTNMFPLNRKNTLLQNDKNEMNKDSSYDKKTDALDNYK  840
 841 NDSTIDMEKKKNKKKSNFFFSNDDEETKNKNKTNVNQKKKKNPNDKLDKNERRIPAYILN  900
 901 KLTIKAKHFQHALNICNPSSLRERQVQIPTVTWNDIGGMNEVKEQLKETILYPLEYKHLY  960
 961 NKFNSNYNKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLF 1020
1021 DKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNR 1080
1081 PDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEGFSGA 1140
1141 DITNLCQSAVNEAIKETIHLLNIRKKEQEEQRKKNKNSFKIDDTDTYDPVPTLSKKHFDL 1200
1201 AFKNARISIQPEDVLKYEKFKEKLSLQDF 1229

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 350...425 
  1 klrvleAdkcpvnmddLqlepGDvieieGkkktfafvirasdedigpGiIRidgvqRkNa  59
350 NLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLDRSLKKHYVVISFAMKKNL 409

 61 gvsiGDeVtVrpkadv  76
410 RLMHNDIIKIHPFMNA 425