Protein PF08_0042 (PlasmoDB link) - New domain DEAD (Pfam link)

Sequence and domain localizations (colored) at: 9...188 

  1 MRELPILKYKHEIKKLIKKNNLIIIKGETGCGKTTQVPQIINEIFFDKKEKKYDNIKHKN  60
 61 DEKKKRKEKKKMLISLPRRVATITVAERVSKEMKRGDIGNYVGYTIRFKNVCSDKTRIKF 120
121 VTDGILIREIMNDPLLKKYKFLILDEIHERSIRTDVLLGYTKILLQKRKKIKIILMSATF 180
181 DINIFNQFFNNPPIITIPHKLHKITIYYPRRNIEDYILSVVSTILQIHFGNTSYSSEFEN 240
241 DDDHRENKPNELNELNKSNEQNELNESNEVNKEHDSYESNKTHDINEIDEQNNLQTDNIS 300
301 MNNINEDIKKTEDKSLGDILVFLPGQEEIEMVNIMLKEKLKIIYKGNLLNKLMKERNNYN 360
361 NQNDFQNKINNKFNTDDHILNEICFHFGKTEIMPDKIYNMKILQLYSSLPNKKQKVIFEP 420
421 VPPNTRKVILSTNIAETSVTIPNIKYVIDSGKVKIKYFDVNRGSNVLRVTQISKDSAIQR 480
481 SGRAGREAPGQVYRIYTKEEYENMNPFLIPEIFRSDLTQIYLELKAMNINNPLEFNFPEN 540
541 PRKELFVHSAKMLFKINAIDMNNNLTDLGKKLCLFPLNPIYANILLCSIEFNCIDEIATI 600
601 VALLNCDSIFLNYNFYEDLDTLNNDSLDKKKNNNEQKKIVQKNSVEDSKENINKLENYDK 660
661 KKGKNNNLEPYDDDHDDNDNDSNNNDDDMGEKKMNDKNKLINVARRKLIHPDGDHLTLLH 720
721 IFYLWQEADIKEKKHFCNIYALNNEILQQVEKIKIQLLEIMKNKMKIEIPKKLHMHKWDQ 780
781 ILICLCKACFFNIAKSTSNTNVYINLVNKTKIRIHPSSTLFNSYIKPTFIFYSDIVQTKR 840
841 LYARIVTKIEADWLLKYVSAKFQVAKS 867

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 9...188 
  1 tpieaipaileGrDvlvqApTGSGKTlAfllPileallk.p....en.nqeskplkkkkd  59
  9 YKHEIKKLIKKNNLIIIKGETGCGKTTQVPQIINEIFFDkKekkyDNiKHKNDEKKKRKE  68

 61 gpqalvlaPTReLaeQiyeel.kklgkgkvallyGdsikeqleklkgpdIlvgTPgrLld 119
 69 KKKMLISLPRRVATITVAERVsKEMKRGDIGNYVGYTIRFKNVCSDKTRIKFVTDGILIR 128

121 llrkrgalknlkllVlDEAdrmGfgddleeilrrlpr.pkpnrqtllfSATlp.rnvedl 179
129 EIMNDPLLKKYKFLILDEIHERSIRTDVLLGYTKILLqKRKKIKIILMSATFDiNIFNQF 188