Protein PF11_0077 (PlasmoDB link) - New domain DEAD (Pfam link)

Sequence and domain localizations (colored) at: 190...770 

   1 MRNKYFLLHSYNCYFNNNIKPLFLLQQAKCLRTKKKKNWESPERAGIFSQEEKKKKNHLA   60
  61 SQQYEEYSFDMNNKDLYNNNNNNNNNNNNNNISYNHKNYYNNFITDKEMNKKFNHTNNDR  120
 121 EDYNIENNNNLKHKYEEIKKKLYKKYNYHEIGSDPQNINKYEDNYENINELNIHKMLLLG  180
 181 LQNIHINELNKMQINSFLTIQQGKDIIINYPDGSGKTIAYLLPILNNLYFLHDYLEQIIL  240
 241 DSYNEKENVTSNKNVIQKNYKFNNNFNLNNELNDYLLKYSHYKNNVFFEDNTLDISNKMK  300
 301 TKKFDLLPSSFNETNKTKYIQGTGGRKSKSTGKNKLNHLNDTSLSMDNNTNELIINNISI  360
 361 MNKLIEIIKINNIKLSNLNSDYTNEEELKKLDNIIKYNITNRNNNICANINDQNKCAKDR  420
 421 YNEESIYRYLTLNPLQINKTVVILTINKDNISQIINLIKKLDILKRINIQTLNDVPYNDY  480
 481 SNNIDHMIDTQIDDVKNNMHNSHTQTHKRDNKYKSASNKFHDDNIDKDYYVNNNIKEENY  540
 541 DLENLQVSKVTHIDNPVLCNDEIMWTYADILITTPDIFLNSYKNNNKISNNIIPSIIIFD  600
 601 EIDMLFQNNAYRNTMMNIFQIIKKRPEIYNPHIDISSHNIDNINESIDNALIYKKRNVNG  660
 661 YEEYMSQDISTNNINNINNNIHNIHNNIHDNSNNNTCYDNYSKYTRNRTNDKSDVQLNNN  720
 721 ITNACNNVNTFYKSKNYNNRGKDKKEDTGLPLIQLIYVSSTLPSVGPTTAGSMLTERFNN  780
 781 IVEIVSKDNYKIPNNIQTQWIELNKEKMINLYLYEDREVEHNLKDDEERKEKHENENNYV  840
 841 DLKDVSLSNKINKFEKSSFEHRLDILIYILKKYHERTIMYEMKRYNNDKCDDNNKCDDND  900
 901 KCDEKTASIKYFNKKKFKLIQKYPIHKTIIFVNSIKDCIKIYNFLKKHNWPVFSFHKNLS  960
 961 LNSRIQNLHSFSCTQTGILITTDLISRGINIKNVDHIINFHFPLDVITYIHRLGKINRLH 1020
1021 NNIMENYNNKNISTSTLDRKKKKKKDEEKNKVHEKKIYLVTNLISTSNMPLADSIRNFDY 1080
1081 SNTSLLSLFSRKKSFKMKNKRKMNENTSSRYINMETLKEIELEINDKKLTSLFDVDDERD 1140
1141 KIQNTSLPDEGNKNNSYVKAPFTVFTLEDTDDEDENMSEYINDKNDDDNTSNREHEKFNM 1200
1201 MGKKGKNKNNNDTTNNRNNNNNNNIFISSTNTYPTNNSFHFNETEKENIQRNYNIPKNSN 1260
1261 LNIPSWDDVQFDHKKYIIERFKQKECYLMNQVKRGKLILNNFESNNDEDELLF 1313

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 190...770 
  1 tpiQaeaipaileGrDvlvqApTGSGKTlAfllPileallk.p.................  59
190 NKMQINSFLTIQQGKDIIINYPDGSGKTIAYLLPILNNLYFlHdyleqiildsynekenv 249

 61 ............................................................ 119
250 tsnknviqknykfnnnfnlnnelndyllkyshyknnvffedntldisnkmktkkfdllps 309

121 ............................................................ 179
310 sfnetnktkyiqgtggrkskstgknklnhlndtslsmdnntneliinnisimnklieiik 369

181 .....................................................en.nqes 239
370 inniklsnlnsdytneeelkkldniikynitnrnnnicanindqnkcakdrynEEsIYRY 429

241 kplkkkkdgpqalvlaPTReLaeQiyeelkklgkglgl...................... 299
430 LTLNPLQINKTVVILTINKDNISQIINLIKKLDILKRIniqtlndvpyndysnnidhmid 489

301 ...........................................................k 359
490 tqiddvknnmhnshtqthkrdnkyksasnkfhddnidkdyyvnnnikeenydlenlqvsK 549

361 vallGdsikeqleklrlkpdIlvgTPgrLldllkrgadlknlkl...lVlDEAdrll.dm 419
550 VTHIDNPVLCNDEIMWTYADILITTPDIFLNSYKNNNKISNNIIpsiIIFDEIDMLFqNN 609

421 Gfgddleeilrrlppk............................................ 479
610 AYRNTMMNIFQIIKKRpeiynphidisshnidninesidnaliykkrnvngyeeymsqdi 669

481 ............................................................ 539
670 stnninninnnihnihnnihdnsnnntcydnyskytrnrtndksdvqlnnnitnacnnvn 729

541 ......................krqtllfSATlp.rnvedl 581
730 tfyksknynnrgkdkkedtglpLIQLIYVSSTLPsVGPTTA 770