Protein PF11_0317 (PlasmoDB link) - New domain SMC_hinge (Pfam link)

Sequence and domain localizations (colored) at: 912...1123 

   1 MERRGKNQTNDATLNEFDDDTSEFSMNILNHPNTDVLVSPIKVVDHDFNNFINNKCLDYS   60
  61 IDSSLDITTSNLTTLKSKGQQKINKSNHAVQNGNNNMDEKIKKNTILVNKEEKNKKGDAN  120
 121 VNVAHENVALQNVALQNAALQNVEEENNLTRNKGNFKYAENFSGSNNNHYGSRVIQKSKH  180
 181 TQDYRKDGSYEQEEIEDNEYINISQSKAQHEDMNNVQSIIPHDDSIITPSNHNNLKCDVL  240
 241 IKDKDQSYNRNMKKYSEFNLKQQDLSISQDYLNNSILSSVGLYKENDLCFIKYIIVSNFK  300
 301 SYEDENIIGPFSKFTSIIGPNGSGKSNIMDCICFALGINNKYLRVKNLRNLIYHKENEKA  360
 361 EDINKRICYVKIILECNKENVEIKRTLNYKGVSNFYINDKLVDQKEYMNFLRKNRIETKT  420
 421 KTCLIFQGDIEDIINKKPNELAKLFEYISGSDEYEQIYEDIKEKLKEKQINCKNYLNEKK  480
 481 KIEQEMKIHKIQMNDNIEHNKLKENYEYEIKLYYLFKLYHYFKKKEKFKEDLLLYKEESL  540
 541 QFEQDILNQNKKKANTLEKNNLIKKKESIKIEEDIKKNYVQINQLKILLNEISEKKKFCN  600
 601 DSLQKLVSNKKLKINMQEHCNKFMENLNLQIKEQNKKLENEYKNKLKINIKFFSKYECVQ  660
 661 NIIKTKIEECKMNSHIDQQDQNESNVHLNNENIKKKNDKKGKKKLNINNHDDMKISNQDV  720
 721 SNNNNNMMEYYTNMLNFLKDEKILNKIHIDSTNNYENPYENYNIIEFIENIDEYKKCKET  780
 781 YLYLCANSNININNYTNLSCSLKKDIKELQEECDTLNRKKQKELLEYESEKLAYDQLNER  840
 841 IYKLNSVIKEQDDNIQNNKMKIKMWNETILQKEKQIEILEEQTNILNVHKNELISFEKKR  900
 901 DIIKNLKNTFGHDQVFDEVSNLYQVNNQIYYTAVNNVIHKYNNFLVVRNIDIGMKCIKYL  960
 961 KDNKLQRMDFIPYENFVSNLKKKKINKNNITEEVYTRKNEQQKQKQKQGRDGGGDGDVGG 1020
1021 DGDVGGDGDVGGDAGGDDDVGGDDDYDYNDFQNTEHDTHLGNHKRSVSSFNNVDKVINTF 1080
1081 KKKNIILANNCLVCDQEYKIMFDYLIGEDTLIVNNIKDAEDIKNRFPYININMVTLNGHV 1140
1141 ISKNNNLIIDITNRYSDIEKFNNKRLNINLYNKLINEKEECINNINECNRNIIQTNELIN 1200
1201 KQQSEYELNKKKISSILIKKNIFEKEIEAKNKVMENYEQKIDKLKNIDLKKKFELLDTYE 1260
1261 KELFKERNSLSMYQKDAFKNLNHKLKIDNIYEIIEHNLRDIDKINENINRIKNNIKKLND 1320
1321 DINELLDKKNEINFLEKNEESINEENIKKQLISLEKQEKESNEQIDNIQKILQKLEEDKI 1380
1381 NIYKNLNNLNQELNQLRDNINTNFEKYEHIENKIENCQKKIQIYTQFINDLINECDINSV 1440
1441 NIFLTNNLLKDIHDQVDINQYAQTKNKKENDKNYNNNNNNNNNNNNKKKKKKKKESKGKS 1500
1501 KSKKNHMSSDPYQKRKSKLLEDSDSEQEYNTSNSNNTSCNISEEENDIHEHDEEEQNNIL 1560
1561 LSNISFDLLSDDLKNMENDKDINNEKENMEKEIERKKKLLKLKNVNCNAEKEYEKLTSKL 1620
1621 KSIDVSLSEERKECNLFERNFRILQKKRSYKFLHCFNYIKNIIDNVYNNLTYNAKHHVGG 1680
1681 QAFLDLCNFNEFNKDDEPFYCGIKYNNMPPMKRYFEISELSGGEKSISALALIFSIQKYI 1740
1741 NNSFIILDEVDANMDPLKIQSLTRYLNSINSQVIVISLKEKFFSKSQSLIGVYKNKHKKC 1800
1801 SKTITLDISKYRQDVPNN 1818

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 912...1123 
   1 asgvlGrvadlisVekg.yekAleaaLGadLdavvVdnaeaakkaleelkkarealpgat   59
 912 HDQVFDEVSNLYQVNNQiYYTAVNNVIHKYNNFLVVRNIDIGMKCIKYLKDNKLQRMDFI  971

  61 plaglvrlpa..................................................  119
 972 PYENFVSNLKkkkinknniteevytrkneqqkqkqkqgrdgggdgdvggdgdvggdgdvg 1031

 121 ..........................................................dl  179
1032 gdaggdddvggdddydyndfqntehdthlgnhkrsvssfnnvdkvintfkkkniilanNC 1091

 181 idydpelrkalrrlLg.qtlvVedldeArrla  212
1092 LVCDQEYKIMFDYLIGeDTLIVNNIKDAEDIK 1123