Protein PF11_0469 (PlasmoDB link) - New domain RNA_pol_Rpc82 (Pfam link)

Sequence and domain localizations (colored) at: 487...813 

  1 MIKNELDYLKYIICDIFGSCCSDIVEIILLYGNKLSIYELINLSSYEFNVVRNVLLCLLI  60
 61 HNIVDVNIIYSKSIECNHLSPEETRGVINVYDNNKMNQHSNNEMNQNSNNKMNQHCNNKM 120
121 NQHCNNKMNQHCNNKMNQHSDNKNKYLFKVGIKKKNIISHHKHNEELKTIPDIKNEEMQS 180
181 FNFLCNSKNYEYMKRCKCDSCICKIRRVEYFVIIKNIYVLVRYPSILYYIHPTSIIKDKK 240
241 SITSLNNFSTTSSDLQLDINTYNFFNTEMIDEFEDLTNLCDDKNGDIIKNNNNNNNNHNH 300
301 NNHNNNNHINNHNDDYLHNRNQIQDDTFFRNSNGLVEKNETLNFIKKIILIRIIKNGRMT 360
361 INKCIENLNNDDYAEVCKKDVPEVNKNYLRFLFLQLLKKRFIKKCKYFNEHECENDKRQK 420
421 YDVMKNEVRKNDNYKKMYTNNMKHNSNDIDLVQNDPIDDTSLLLYNHTNENNNNNDKNSI 480
481 NLNNIGCNDNVTNPEKSIHYSPYNDIYPNDYAHTTKKIYNKNIINNKKKKKDTRKDEICD 540
541 NTDISKNNLKKRKIDDDIIIKEQENYMPNNIDEQQKKREVIKQLHNEDIHIKTNKSIKNY 600
601 NEYNINGIYKNNHNDNLLKLIDNKYTYFQVDNDTLSIIYLKQECFNFITHFFNLNEVSRC 660
661 IFYVLLNNVKFYYSQEENDYKETCLFLSFEYIEKCVISKLKRNKNIFVDKHVVLQNLNAL 720
721 IKLPDQLIQIKCNQVITYAADFVNIKNIYKKKIISNVLENMTGLEALRIWKYLLTNSEEK 780
781 INDELISENVLIPLNDVRKKLYHLLYHGYIKAHEYNNSNNNKTYIKHSLSFSTDFYFTSN 840
841 KVKENLFTIAKNIYIRKFLENNEINTLHNKSNICINETQDHNKKKKITLTSKEYAVDYLE 900
901 MALINMDKLIFIFSS 915

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 487...813 
  1 veagflirvpkleftpigdlwnqlyrkhlkapplnttesdlkkrplkaktkfrklsesse  59
487 CNDNVTNPEKSIHYSPYNDIYPNDYAHTTKKIYNKNIINNKKKKKDTRKDEICDNTDISK 546

 61 akrkkrkldgdpetslrtv.l..nraeaLdpgvvwrvNferFhkhlRdeqLvdl....vk 119
547 NNLKKRKIDDDIIIKEQENyMpnNIDEQQKKREVIKQLHNEDIHIKTNKSIKNYneynIN 606

121 erlgsttaevylkltEqksprl...raiLsmtgllqsleesttppvtfneItrnlfsdee 179
607 GIYKNNHNDNLLKLIDNKYTYFqvdNDTLSIIYLKQECFNFITHFFNLNEVSRCIFYVLL 666

181 edtdedegdaesgtn.....isvslinqhL........klLasspl............gF 239
667 NNVKFYYSQEENDYKetclfLSFEYIEKCVisklkrnkNIFVDKHVvlqnlnaliklpDQ 726

241 lrkvgdsGGGeyiVdykrlievLksaeyEsiIaerfGprAaRifRllrdkg..lvEekqi 299
727 LIQIKCNQVITYAADFVNIKNIYKKKIISNVLENMTGLEALRIWKYLLTNSeeKINDELI 786

301 adtALmpeKdarslLykLvkegfveiQ 327
787 SENVLIPLNDVRKKLYHLLYHGYIKAH 813