Protein PF13_0350 (PlasmoDB link) - New domain SRP-alpha_N (Pfam link)

Sequence and domain localizations (colored) at: 25...253 

  1 MIDVINIFNKGGLLLWSYNFYEIDDTTIRTIVKHVLIEEKYEEFSKKHNNYHAKWKLIND  60
 61 LDLVILIVYQGIQNSTYLENLFSQVKKNFIKILPKNKDVFDYDLPIDFEEHFLQIIENLD 120
121 EHKNLNNNTKKDDSKKNNKHNTKNNKSDDETSSDNQNNSNSTVEDDDDENTVKNKKNVKV 180
181 KKTAREWELSQKVTKRDIRKLDYSKNEDNDNNNNNNKNNEMYNNNNNNNNNNNNNNDNIY 240
241 NNNNSKYEGDYDDSSDGAIESKNNILNKLNDSLFKMFSYNSKIEEEDIEKILHEIKNKLL 300
301 SKNVAIGICDTLIDRMKENLIGKKKTLFALNVKKTVSNVLSETIQSILIPKDSVDVLRSA 360
361 IESKSMGKLYSIVFLGVNGVGKSTNLAKVCYYLKNKGNLKIMIAACDTFRAGAVEQLRIH 420
421 ANCLNVFLYEKGYGKDASAIAKEAILYAKKENYDVILIDTAGRMQDNEPLMRSLGKLILY 480
481 NNPDLILFVGEALVGNDAIDQLKKFNQALTDATCNSTNKRTIDGIILTKFDTVDDKVGTA 540
541 LSMVYLTGKPIVFVGVGQKYTHLKKFNVNMVVKALS 576

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 25...253 
  1 lkgvnaLIrsvlLeERsvnnsfytddYTlkyklaNelgLVFVvvFQkllhLaYvdkLlsd  59
 25 DTTIRTIVKHVLIEEKYEEFSKKHNNYHAKWKLINDLDLVILIVYQGIQNSTYLENLFSQ  84

 61 vhqlFkelYdeieDdFDfqveaEAeeeelkvtmkkeeesmveteSkKpkekakNKvsakk 119
 85 VKKNFIKILPKNKDVFDYDLPIDFEEHFLQIIENLDEHKNLNNNTKKDDSKKNNKHNTKN 144

121 eGsdaekssgpenSSNVAvdlsKdkkgakskKsaaPkKkpRvWDlgg..teedqakLDfS 179
145 NKSDDETSSDNQNNSNSTVEDDDDENTVKNKKNVKVKKTAREWELSQkvTKRDIRKLDYS 204

181 snsspetadnedvdSliv...gtnqGgklkdgDvvs.eddSdsEdDdep 229
205 KNEDNDNNNNNNKNNEMYnnnNNNNNNNNNNNDNIYnNNNSKYEGDYDD 253