Protein PF14_0056 (PlasmoDB link) - New domain RRM_1 (Pfam link)

Sequence and domain localizations (colored) at: 14...79 / 580...649 

   1 MNVIDDQAIDKHKVFVRNIKESDVPLITKEFERICNKHFFFSNNSYTSKNAICHFKSAKD   60
  61 AEDFISKYNNIKLCNSYIKSEYALKKKYEDKKLISIVYNRKKIKYDNSLKIYTDCNVDNI  120
 121 VILNFLKTLYVNNTNLIYPLVEQYTKSESNSNVYNNINSSTYKNNDKIGDNNNSNKFIDD  180
 181 IEIVSDKKNIKFEDIIINIEKEMKHSRNNEKNKNNNTRLIDKNASKKIKIVYVIEFLNIK  240
 241 IAKMFFTLINKTVFQNFLKDQNVKNTHDKNNNNNNNNNNNKNNNNNNNNKNNNNNNNNDN  300
 301 IYFRYFFHELCQTKKNDKKVILQNLSRSCHVENIQKLFKHIEPNAKIFFPKKNNKKQGYA  360
 361 IVSFASLYNAQKALQLNKTKLCGNIITIQTINNNNDKSIGKEEEHNKYIKENEVNVKREH  420
 421 EEEKYSKYAIKNKNDDNEGDDNEGDDDEGDDDNEGDDDNEGDDDEGDDDEGDDDEGDDDN  480
 481 EGDDDNEGDDDNEGDDDNEGDDNNDDSDNNDDSDNNDDSDNNDHSDNNDHSDYNDDNGLD  540
 541 KSFEKINNFQKKNNDDIIRPNDEKQKKKKNLNDVEEGKTLFITNIPPETTDDEIRNYIIN  600
 601 NINKDYIYIKTCQSNNKNLSVFVKLKYKQDADTFLKKIGEYEYDENNDENDNTNNDENNN  660
 661 DNSISDDEENIIDKFYKNKKNKKEKMKKILLKENKNKHNINSEILFFKNTYLMIKRAVNR  720
 721 DLIKEKRKNYIKSTDQENENNLKKKTKQNNIHLINDNNVNNENLSENIIKRNNNLMEKKK  780
 781 ELLKNKNFFINPCRIYIRNYPAVLEQNTFRQLITKYFTPIIMKKYNMKKKEAFKKASQII  840
 841 KKIKIIKDTDTTNSKDLNLSKEKSSKLKNKNIILNTNSNNNNVASKNVKNYICFVDINKH  900
 901 ENAKKMIQLLQNKNIYELINEIIYKKKFQTIKKNKNIIYVDYCIEDIRMIHIKKIKEEKF  960
 961 LNHVKQQNLDKNINNKIIDKKKKNKKKNKVSRGKRQREKKRLLKMKNECTNILNVINNAT 1020
1021 LTKQIINQENNTKNEITDKKDKDKHTKLKKLNKTNKSIDEKKENKTKKNVINKKKPDKQK 1080
1081 EAKAKKKTKKDDVVSKNWKKCFKYI 1105

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 14...79 
 1 lfVgNtteedLkdlFskfGpiesikivrretgrskGfaFVeFedeedAekAldalnGkel 59
14 VFVRNIKESDVPLITKEFERICNKHFFFSNNSYTSKNAICHFKSAKDAEDFISKYNNIKL 73

61 ggrelr 66
74 CNSYIK 79
Occurence 580...649 
  1 lfVgNLppdtteedLkdlFsk.fGpisikivrretgrskGfaFVeFedeedAekAldaln  59
580 LFITNIPPETTDDEIRNYIINnINKDYIYIKTCQSNNKNLSVFVKLKYKQDADTFLKKIG 639

 61 Gkelggrelr  70
640 EYEYDENNDE 649