Protein PF14_0695 (PlasmoDB link) - New domain RNA_pol_A_bac (Pfam link)

Sequence and domain localizations (colored) at: 488...581 

  1 MFERKNKRGKIKLILNKNKEEKSIRRKSLKKYIVYSINNDKEFIPINDNYKIFQKRNFIK  60
 61 KYHVKDEEIKEYIEEIKKNRASGYEPKFPEETFRTPDGLTNIILDYKYKNDNLRIHNYYF 120
121 FFLYFLKKLGDEEQRKIKLRKRMEGKNDEYGDSINDDVDNRMINVQEFLFLKKKGFFEGE 180
181 LYTWKNWVLLNRGEWRDTIVYGDEVDNNNNNNNSNSSSSSSSSSSSSSSSSSSSSSSSSS 240
241 SSSSSSSNRSSNFCGDDNIYNVYNNYDDESYDIKTLRPLVEPKMKRMPIEYWGSFRAIDF 300
301 NVNHYPIYKKLFDYFNKVNVNENDERGKFYPFLFFPRFGVGRDRSGLGYGDAQYFGNYGD 360
361 FYEKRKEREERIRKRNIEMQLKENDKDKDIYDMNIIDNKSSERILNTNIHKEIFIDKDDF 420
421 GPNFIKIEEATDIIKYPQNGKLYQKFYIGPLNITDGHTFGSLIKYVCQTQIYGYAIVGIK 480
481 VHNMNEDTKINNVQEDLLEIALNISDVCIYSKEINLESNIRLIFKGPLMLVAGMIPLPSH 540
541 LKIINKEHYICTIKEDGFIDISIKIEYGKGHWLTYDKGLYKRERGSDNDCMKKREIKEVV 600
601 HKNYMPISSSFGACRMIRLTVHKIATKFWCEDRCEFTDPKQMLVVEIWTDCRMLPKNVLL 660
661 YGIKNIKKILRKFREMIVKDTDFTFQEEEQEIKNLWPAIDKYKFLQTRQKMEGGPPIHNI 720
721 DEDVLSEQIQKNKSLDPFSQELMNPDNFPKHSNIQLPIQDTPPPFLDTLEWLKMEVKKEN 780
781 NKKNITQFKNTKGKGTKYKDKFNKNKTYDYDEYLNERLSDILDEK 825

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 488...581 
  1 VyIngvsEDvleIilNlKelvvKiceegceecltLdvkGpgeVtAgDlksdpdVeivnpD  59
488 TKINNVQEDLLEIALNISDVCIYSKEINLESNIRLIFKGPLMLVAGMIPLPSHLKIINKE 547

 61 ilIatLrkgqeLelearakkGrG....yvhAkFS  94
548 HYICTIKEDGFIDISIKIEYGKGhwltYDKGLYK 581