Protein PFC0140c (PlasmoDB link) - New domain CDC48_N (Pfam link)

Sequence and domain localizations (colored) at: 1...85 

  1 MRTNLQCCKLQSQELALTNCGFINIGLYNNLKKSVKSNDVYSEVGNMVLILRGDGNIGRE  60
 61 EIALNTCQREFSRIQLKELVEINILDKENKNDLVNFIPIDSIELEVNLFVKPDRLIEMED 120
121 EKLEDVFKKYFLNHILTKGQILALKYNDILLKCIVKDLKTADFDEIKRLNNSNNNNNNRN 180
181 SSGFSGYFNKWSPGFNNADNQNLSYNRYERGILFENTECIFTSISDGGKLCIESKKVLKQ 240
241 NIIKNNFNFEELGIGALDEEFKTIFRRTFASRIYPNYIIKQLSIKHVKGMILYGPPGTGK 300
301 TLIARQIGKTLNAREPKIINGPEILNKYVGQSEENIRNLFKDAEMEYKQSGENSLLHIII 360
361 LDEIDAICRQRGNVGSSSTGVNDSVVNQLLSKIDGVNSLNNILLIGMTNRIDLIDEALLR 420
421 PGRFELHIEISLPNKEGRIQILNIHTKNMRMSNKLSSDVNILELAERTPNFSGAEIEGLV 480
481 RNTVSYAFERHINFNDLTKPINADDIMITKNDFMKALKETKPAFGAEEDIIGNLLCNGII 540
541 NYGKEYENIENTCKLLIKQIVDNENTKLMSILLYGENGSGKTTISAYIAKCANFHFTKFI 600
601 TPENLIGYSEIGRINYINKIFEDAYKTPLSLVILDNIERLIDYTRIGPRFSNSILQAIMV 660
661 LIKKKPKKENQKILIICTTSEYQFMKDVGLTKNFFVNIHVPLLSTSSSIKNVLQHRNQTY 720
721 HDFPNNEIEKVISSNIIKNIAIKNLLMIIDMASEASDDKNITSDVFLKIFNDCGLLLDDD 780
781 TDY 783

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 1...85 
 1 klrvleAdkcpddgrsiarldpvnmddLqlepGDv....ieieGkkfafvirasedigpG 59
 1 MRTNLQCCKLQSQELALTNCGFINIGLYNNLKKSVksndVYSEVGNMVLILRGDGNIGRE 60

61 iIRidgvqRkNagvsiGDeVtVrdv 85
61 EIALNTCQREFSRIQLKELVEINIL 85