Protein PFC0440c (PlasmoDB link) - New domain DEAD (Pfam link)

Sequence and domain localizations (colored) at: 503...664 

   1 MNNTFKINKKRRTVYESYNIINIANKKRYMCNDNKMDNDNNIINEKKYFNNSSSIKNTGN   60
  61 NYKNDNIDKSYDMCERRSMMDRDENIYNNNYKNKNRNNYSNKNNYSNNINHMDNRRNTYK  120
 121 GDLDGRKQYLSNKHYESKNDNENSYNLKKYNFNIPPIKYNNNNNNNNNNNNNDRQNIDNN  180
 181 IYKFYDDKNEKKSNKTHSYGNNFNNEFNTFNDPKQNYMSNESHNMTQDGHPIYNHNNNNN  240
 241 DGRIKNRKDISLSSYGYNKISNDNLSKENTSYINQYNNSGGANRHVINAQHNNNQHNNNQ  300
 301 HNNNFNYHNYKNAKPYQDKYKNGDSFKFSAYNAEQHDNMDKNYYQDIHKNNMKHSTKGDT  360
 361 AISFNGQKVFGSFKNKQMKEKRKFFKNKERGSSINRPGMHNNNNNYNNNNNNNYYNNYNN  420
 421 HFCDDAERRNNKNENWCEINSNELYEKDGDMPIYNANENCNLKKMIYKNDKKEKEKIKIL  480
 481 LTEDNVNNVQSNIEKLSIYKSRNEIIEMIEKNDVTFINGETGSGKSTCVPKFLLEENIRE  540
 541 NKKINIIVTEPRRIACIALSKILSELTNEKLGQKIGYRISGESLYDSEKTVITYITIGYL  600
 601 FKLFLHHKNMYKKFTHVIIDEIHDRSILLDIVLLFIKLYLHNKQKDEQMFKLIIMSATMQ  660
 661 SNLFYSYFEHPNIKMGSIFIGTKIFSIDTFYIEDIINYTRYGSRNIHDEKINDEKINDEK  720
 721 INDEKINDEKINDDNKKSCDDKKSCDDKKSCDGNNNFVKESVIDFILRRKNCNKINLSKN  780
 781 SEMLLYKIKSEYDKNIHMFNNNNNKYCNDKNKDLDVDEIIPANVFSNISNLCLELVYNLC  840
 841 LKGDSVIIFLSGMQDITDMYHQLSMIINNNMDNPSNSNININNGNDANDANDVNNMHNMH  900
 901 NMHNMHNIANQLTYHRTDIKIHIHMLHSCLYDNTIHKLKHNDTDINIFLSSNIAESSITI  960
 961 PNVRLVIDFCIQKNIEYNDKKKAHILVKKWINKSSMEQRKGRCGRTCHGICIRMISKNFL 1020
1021 NLLRDHKISEIYTHSLHLLYLYILKSMSVLNGLINKRNEVVHCDNTNVYNVKEVKDQKNG 1080
1081 ICKNEISHSHAENKKLTIYDVLSMIIEKPSKEKIKSTRYELEKVKAVIKIKDKLVISIIG 1140
1141 QIMIRFNLSINLCRLLLYGVLLDVTFDTIILIGILNTNDIFPNINLYSSKNIYSYAVSLE 1200
1201 ICSKQKAYFDGNTYSEPIMLRNVFLEWLCVYLLYVQGLKKENKFHRKELKTYYMNTCSIM 1260
1261 NKRNHVNSKKLLCVINSVDNLCKKMLKMLNKNSNAYKSCVYLLYLLRGGSDINYNMGNNS 1320
1321 NNNNDNSGEIINADGITPNNTHMNEINGMNVFNVVTKYCLFDYSNQNIYLKFLFSLSFTP 1380
1381 LFIHGSPNLPLRDLNEGKKKSKKLMNVLNFMIDNKLDVKNCIYFSGVYIPDINILKRAIC 1440
1441 IMCPYLSFDIYVSKNIYYVYFHNNNYHNNYHNNILKGDDFSYYNKTICDKGDADMSVNSY 1500
1501 LNLTQEGHDTDGITSFGVSPLMNNNNMYGNNYIHNNVYYPCNGINNYYNNNVVNSQNNYM 1560
1561 MKMIMSNYYSESFLNLTSGKNYPDIIEKIRNKLLYKYNNNVEKSIFHNFYNNILNLIQPV 1620
1621 NAIVPVYSNKYDEINNASICTNIINMFSNGKWIFTMPLFNPNKRKCEVSEYFNHKYELKK 1680
1681 PKHLFLVKWMFLNTDNYKIKKNKQKEHVMDTNNALVNNNSLGKNVSKNDIHRDNINDYSL 1740
1741 NDQEDQQYNKGYYYDDYDDYDDYDDDDNNDDNNDNNNNNNDDNNNNNDDDYLSNVKVESD 1800
1801 NNNTHQNNPDGYEGNDSSSMCSDNNKKSKQKKMKCNLNFRSVLGFLSMCPFNFDTKRNIY 1860
1861 DNQTADIYAVCSSIDYSYTNDTYTWVNYVTVLPNKYFLTFFLSSIPYHDNVIIQTRTNLY 1920
1921 TSDILSIKIFDSKEIILKNMKKMKHKNKTNTTNYYDTNSTINNPNITKHDLLRVNYLRYV 1980
1981 MSKLLLSLTLSFNRQEIEQNTQPLKLSEKSKRKSVIINKDGPNNDNRVDANDKNVNGNDK 2040
2041 NVNDNDKNVNSQDNQGNQKDHFDDEDEEYFSDEDIMSDIEENNILKENLYLKQIVINMIE 2100
2101 ENNMDYINYNKYSMDNMDIDEHFNLQYLYEDEHFINLNEKWYNNKGEILMNTYDYLYNSL 2160
2161 KNENDYNQYNNNNNNNNNNNNNSSYMVKNIKEKALNSLEAVKSSYLNNNFSVQVQNTMNA 2220
2221 YERTNSEDFLFFQPINISPIKEANYKLRSMYYNEVAPTLDKFRRTNRQV 2269

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 503...664 
  1 tpiipaileGrDvlvqApTGSGKTlAfllPileallk.pdgpqalvlaPTReLaeQiyee  59
503 NEIIEMIEKNDVTFINGETGSGKSTCVPKFLLEENIReNKKINIIVTEPRRIACIALSKI 562

 61 lkklgkgllglkvallyGGdsikeqkgpdIlvgTPgrLldlllkgrkrlknlkllVlDEA 119
563 LSELTNEKLGQKIGYRISGESLYDSEKTVITYITIGYLFKLFLHHKNMYKKFTHVIIDEI 622

121 drll.dmGfgddleeilrrlppkdlpnrqtllfSATlnvedl 162
623 HDRSiLLDIVLLFIKLYLHNKQKDEQMFKLIIMSATMQSNLF 664