Protein PFF0225w (PlasmoDB link) - New domain Helicase_C (Pfam link)

Sequence and domain localizations (colored) at: 1115...1193 

   1 MKSKYFSKGKKASKKNNNNNNNNYNTLEYNNPVSTSLYISTILNKHEKLINKKNKNKIKL   60
  61 YHRNYYNDDEGTPFKREGQIKLLDDIIARDNKKEKKNEIINIESYSNDQLKNDNINNKRI  120
 121 VDIDVGSTYVDGKHFIDISLEHIRRNYHIFHNKNENYVKEEKQNVSYDNKDDFKITRKKL  180
 181 HLLKEEDLNFKYEQIISVNKKFDNIIKNLKLSDKELVKYIICKKCTNLTILKKGKYGTFF  240
 241 FCKSCNKNVSKKYIDNYIFNEQENTFYKDKNKISFEIEKKNSYRIHTFGNIQYAHATNQI  300
 301 INEIIKEIISDIIVIKKNKFKYKNIIKYISKINMPYPMNTCNYYPYGFAYKRKKNKKNIQ  360
 361 PNKDHNEQDKTYQRIEAYKIYKGQEIHKVYDTNNKYYKKQTQPRVIYYRFNFSFCRNNIS  420
 421 FMFRKHNYVVHNKRYDLLFLYNKKFINFIESIKNRKGIYKKVLNKYLSAYLKNDFFNEIN  480
 481 YLPLTWKPRKDYIKAGIFPFNLSKNNRKIESFGRLSVNNNNYLCGCVFPLCTYQLIVRYF  540
 541 IYKLFHTCFIYQIPNFIFYFFRYYYRINNNINKHKMYNYFLKNKYINIFINIYHSKYKQI  600
 601 LDTIKEEKKSISISLSSSNKLEQKEKEKKKNYIKNLYLFDQLSNNTYIFSKQKIEKKIIN  660
 661 HYYHKKIQKIKRQMNQEIKNICLNEIKKKLPIRIQKVILTYQLQAIYFFFKKRGRILIAD  720
 721 EMGLGKTLQAISIFYFYHLYPVLIITPASLKINWFSEIEKYLPAFDPQNVLIINSSNDMP  780
 781 KCASSYKIIIVSFNIYKKLYNLLKEIQFHLIIVDESHFIRTVHYGNQSQLTRLLKKKIRK  840
 841 TKHVLFLSGTPSINRPINIFHQIKYLINNKNIFPKNKIIFGEDYCKKYFYRGEKIYEENL  900
 901 RSWEFHYFLNKIVMIRRTINQVFQNNFPSLKRFFVYLKNDICDNIKNSTLTKSPIHENSF  960
 961 INNSEDNDHIQSVNVKCGYKMDEMYKMNNLDKNNNIPNMGNFSNILDDQNEYKHVAEIPQ 1020
1021 YYNVSSSKKPEQSKLNNSIIYKQERKHKNREILNQYFHIDIKSKKEEEGVSKIVNALQFI 1080
1081 EKNFPNKKKIIFCYHIMVSKCTEDELLKIIKQKKEKENISIDYVSLNGCIPEKEKIEKIL 1140
1141 YFQNNINCYYGIFTICSVSHGLDFSFCNLCFFMEFPVNFFHLQQCESRLFRKNQKHNTYV 1200
1201 FYFLLQKGLGSDHKTWNRFILCSNSTRSIIDGTNFINKDLIYDNISNDALHLINNNQNVI 1260
1261 QENIKEQKCDKHDKHVNHQNCFYTNIHTISKTNLTIKENIYKNQQIYESKKMCNLKEQIF 1320
1321 NQSGNHLYTSIKNKSSFMINKCNNSIPTINHKKYNNNNNNKNKKVYIKKEHVLFQINTFT 1380
1381 NRIHVYYKNKKTNFSIQELDTIKKINKNNQETKNIFILKMCAKNFLCNYNKLNTNEKKLI 1440
1441 EHKKCDINISLLNYWKHIDNNKSNNKQNNLIFQRYIKNVPLKHKTYVKAYIENSFKGKFE 1500
1501 MFYYQEWNSKENLFKCLHCKNKIPLSKNIIHEENQIFQYLHQINAQQDIIKRFHKEINNL 1560
1561 KLKQYNNIQKIIICNENNLFCEGKCRKLYFLKKSSCSLRRLIYERDKGICNMCQLDCTNL 1620
1621 IKQIKNNKYFEINQKIDYFIKMYPLFIENVDHLKKIIQKPKEGYIWHVDHILPVFKGGGE 1680
1681 ASFDNLQTLCTFCHKKKTKNDVKDKKKIKNKK 1712

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 1115...1193 
   1 llk.pgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrGiDipdvnlVInyd   59
1115 EKEnISIDYVSLNGCIPEKEKIEKILYFQNNINcyYGIFTICSVSHGLDFSFCNLCFFME 1174

  61 lpwnpesyiQRiGRaGRaG   79
1175 FPVNFFHLQQCESRLFRKN 1193