Protein PFF1140c (PlasmoDB link) - New domain DEAD (Pfam link)

Sequence and domain localizations (colored) at: 257...468 

   1 MFIKKNEFFFFNIYDLLKKRKFRFSHFIERTNDNFKKQVNEEYARVQRNISLNEDDILKI   60
  61 RNVMIRIGNDKNILSSIIHTYNIPSFFLLDKDVRNHFLSYIKDDISYADQLRNCILMHND  120
 121 VDENKDDDNFFNVQVKKNNNENIKPDNYCNKLDLFNHSNENYTTTPPNQIYNNNNNKNNN  180
 181 NNNNNYYYNNYCCDKQNIHNITKEKLKRSDEIIVNILLIFIKKYYYKQWMFYEHIKRLCD  240
 241 YTEINLYIKNNNKKKVRNIHLYVGPPNSGKTYHAFQKLMLSKNGLYCSPLRLLAWEVYSK  300
 301 LTRMNKKVNLLTGQEIIIKHNNNKQYGDIHHNNNQHGDIHHNNKQHGDIHHNNNQHGDIH  360
 361 HNNKQHGDIHHNNNQHGDIHHNNKQHGDIHHNNNQHGDIHHNNNQDDNVTHTVCTIEMTP  420
 421 LNKEYDCAIVDEIQMINNESRGHAWTNVLMNLNSKDIYLCGSEYIIDLIKNLADILNDKL  480
 481 IIKKFERLGSLHLQEYNTTLEDVQTGDCIITFSRNNIMLLKRILEKYNKRVFVIYGSLPP  540
 541 DSKKKQINMFNEYCKNHIDQTDETTQRDLEHNQHNVQLLYEKKIEKYKIKIDTYKQRLNK  600
 601 NKLNNNMKKYNDSIFYYKNILRKYFHYVKKYKHHQKKKKETILIATDVIGMGLNINIKRI  660
 661 IFYSLKKYDGDILRYLTMSEFLQIAGRAGRFNPSCTNKSIGYITCVHLDDINILKNIFKH  720
 721 KYINSLNYISTGHLKKGESEFRQSNPHHVHNINNLLNIQHSTLLNIYHIIKKEKNLKEHK  780
 781 IDIIANKMNDIYNSAHYQKSEIIKDMHNKNNDSNNNDDYDYDDFMCSRNFTNNYQAKAGF  840
 841 FPNYHIVEELRKTLEYEYNSKIKLHDILKVLVEYVKLNDEYFFLTKNYNNMITITKELEH  900
 901 INLEQNIIFTYSLCPININNIVLLNTLKTFCMSHSILGYVDFFNCMNNNIFYHVDGKKYV  960
 961 DLLNNEPNNNKTINHNILYYSNIQRDTNINKRLINQYDEYVREHVKSNINYKDNNNNNDN 1020
1021 NNDNDNNYYDISTNNFHFNKKIDTDNNFYIHSLWEDNERQIKSINTQNNNLDNIIHIDEY 1080
1081 TQLLEIYYEIMDMYCWLYTKFPDVYKNINLVSNEKKKVSMKIIHMLTHTFNENKQAC 1137

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 257...468 
  1 tpiailqApTGSGKTl.AfllPilgpqalvlaPTReLaeQiyeelkklgkglgl......  59
257 RNIHLYVGPPNSGKTYhAFQKLMLSKNGLYCSPLRLLAWEVYSKLTRMNKKVNLltgqei 316

 61 ............................................................ 119
317 iikhnnnkqygdihhnnnqhgdihhnnkqhgdihhnnnqhgdihhnnkqhgdihhnnnqh 376

121 ..................kyGsikeqleklkgpdIlvgTPgrLldlknlkllVlDEAdrl 179
377 gdihhnnkqhgdihhnnnQHGDIHHNNNQDDNVTHTVCTIEMTPLNKEYDCAIVDEIQMI 436

181 ldmGfgddleeilrrlppkrqtllfSrnvedl 212
437 NNESRGHAWTNVLMNLNSKDIYLCGSEYIIDL 468