List of proteins in chromosomes 1 to 6 where new domains have been detected

PFA0015c (PlasmoDB link)

Annotation: var-like protein
PlasmoDB Workshop 2008 Reannotation: var-like protein

GO annotation :
GO:0004872 : receptor activity
GO:0009405 : pathogenesis
GO:0016021 : integral to membrane

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
Duffy_binding PF05424    1     1327	GO:0004872 : receptor activity GO:0009405 : pathogenesis GO:0016021 : integral to membrane

NEW Pfam domains
Domain Information & Certification Details	GO annotation
PFEMP PF03011    1     1327 Localization E-value Certified by : PF05424 1187...1277 1.6 19.5%	Domain itself: None In association with other domains: None

PFA0165c (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: conserved Plasmodium protein, unknown function

GO annotation :
GO:0005515 : protein binding
GO:0008270 : zinc ion binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
RING SM00184    1     936	GO:0005515 : protein binding GO:0008270 : zinc ion binding

NEW Pfam domains
Domain Information & Certification Details	GO annotation
SPT2 PF08243    1     936 Localization E-value Certified by : SM00184 440...552 5.2 39%	Domain itself: None In association with other domains: None

PFA0170c (PlasmoDB link)

Annotation: zinc carboxy peptidase, putative
PlasmoDB Workshop 2008 Reannotation: zinc carboxypeptidase, putative

GO annotation :
GO:0004181 : metallocarboxypeptidase activity
GO:0008270 : zinc ion binding
GO:0006508 : proteolysis

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:3.40.630.10    1     1620	No Gene Ontology annotation for this domain.
PTHR12756    1     1620	No Gene Ontology annotation for this domain.
SSF53187    1     1620	No Gene Ontology annotation for this domain.
Peptidase_M14 PF00246    1     1620	GO:0004181 : metallocarboxypeptidase activity GO:0008270 : zinc ion binding GO:0006508 : proteolysis

NEW Pfam domains
Domain Information & Certification Details	GO annotation
Bowman-Birk_leg PF00228    1     1620 Localization E-value Certified by : PF02363 881...906 1.4 39.1%	Domain itself: GO:0004867 : serine-type endopeptidase inhibitor activity GO:0005576 : extracellular region In association with other domains: None
C_tripleX PF02363    1     1620 Localization E-value Certified by : PF00228 851...867 3.5 39.1%	Domain itself: None In association with other domains: None

PFA0180w (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: ATP dependent RNA helicase, putative

GO annotation :
GO:0003676 : nucleic acid binding
GO:0004386 : helicase activity
GO:0005524 : ATP binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:3.40.50.300    1     1472	No Gene Ontology annotation for this domain.
HELICASE_CTER PS51194    1     1472	GO:0003676 : nucleic acid binding GO:0004386 : helicase activity GO:0005524 : ATP binding
PTHR10967    1     1472	No Gene Ontology annotation for this domain.
DEXDc SM00487    1     1472	No Gene Ontology annotation for this domain.
HELICc SM00490    1     1472	GO:0003676 : nucleic acid binding GO:0004386 : helicase activity GO:0005524 : ATP binding
SSF52540    1     1472	No Gene Ontology annotation for this domain.
Helicase_C PF00271    1     1472	GO:0003676 : nucleic acid binding GO:0004386 : helicase activity GO:0005524 : ATP binding

NEW Pfam domains
Domain Information & Certification Details	GO annotation
DEAD PF00270    1     1472 Localization E-value Certified by : PF00271 PS51194 SM00490 697...1140 0.00019 4.71% 9.66% 9.66%	Domain itself: GO:0003676 : nucleic acid binding GO:0005524 : ATP binding GO:0008026 : ATP-dependent helicase activity In association with other domains: None

PFA0195w (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: conserved Plasmodium protein, unknown function

No Gene Ontology annotation for this protein.

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
ConA_like_ subgrp G3DSA:2.60.120.200    1     575	No Gene Ontology annotation for this domain.
ConA_like_ lec_gl SSF49899    1     575	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
Gram_pos_anchor PF00746    1     575 Localization E-value Certified by : SSF49899 528...567 1.8 20%	Domain itself: GO:0009986 : cell surface In association with other domains: None

PFA0330w (PlasmoDB link)

Annotation: pfAARP2 protein
PlasmoDB Workshop 2008 Reannotation: pfAARP2 protein

GO annotation :
GO:0042254 : ribosome biogenesis
GO:0005634 : nucleus
GO:0005886 : plasma membrane

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:3.40.50.300    1     1434	No Gene Ontology annotation for this domain.
PTHR12858    1     1434	No Gene Ontology annotation for this domain.
PTHR12858:SF2    1     1434	No Gene Ontology annotation for this domain.
AARP2CN SM00785    1     1434	GO:0042254 : ribosome biogenesis GO:0005634 : nucleus
SSF52540    1     1434	No Gene Ontology annotation for this domain.
AARP2CN PF08142    1     1434	GO:0042254 : ribosome biogenesis GO:0005634 : nucleus
DUF663 PF04950    1     1434	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
GN3L_Grn1 PF08701    1     1434 Localization E-value Certified by : PF01926 8...73 4.6 39.1%	Domain itself: None In association with other domains: None
MMR_HSR1 PF01926    1     1434 Localization E-value Certified by : PF08701 74...178 0.00081 39.1%	Domain itself: GO:0005525 : GTP binding GO:0005622 : intracellular In association with other domains: None

PFA0445w (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: conserved Plasmodium protein, unknown function

No Gene Ontology annotation for this protein.

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
LCCL G3DSA:2.170.130.20    1     1029	No Gene Ontology annotation for this domain.
G3DSA:3.90.182.10    1     1029	No Gene Ontology annotation for this domain.
LCCL PS50820    1     1029	No Gene Ontology annotation for this domain.
Gal_bind_like SSF49785    1     1029	No Gene Ontology annotation for this domain.
SSF56988    1     1029	No Gene Ontology annotation for this domain.
LCCL SSF69848    1     1029	No Gene Ontology annotation for this domain.
LCCL PF03815    1     1029	No Gene Ontology annotation for this domain.
PA14 PF07691    1     1029	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
F5_F8_type_C PF00754    1     1029 Localization E-value Certified by : PF03815 G3DSA:2.170.130.20 PS50820 SSF69848 PF00801 599...712 0.53 19.5% 20% 20% 20% 39.1%	Domain itself: GO:0007155 : cell adhesion In association with other domains: None
PKD PF00801    1     1029 Localization E-value Certified by : SSF49785 PF00754 853...971 2 20% 39.1%	Domain itself: None In association with other domains: None

PFA0505c (PlasmoDB link)

Annotation: DNA-directed RNA polymerase 2 subunit, putative
PlasmoDB Workshop 2008 Reannotation: DNA-directed RNA polymerase 2 subunit, putative

GO annotation :
GO:0003677 : DNA binding
GO:0003899 : DNA-directed RNA polymerase activity
GO:0008270 : zinc ion binding
GO:0030528 : transcription regulator activity
GO:0006366 : transcription from RNA polymerase II promoter
GO:0045449 : regulation of transcription

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:2.20.25.10    1     249	No Gene Ontology annotation for this domain.
ZF_TFIIS_2 PS51133    1     249	GO:0003676 : nucleic acid binding GO:0008270 : zinc ion binding GO:0030528 : transcription regulator activity GO:0045449 : regulation of transcription
PTHR11239    1     249	No Gene Ontology annotation for this domain.
PTHR11239:SF1    1     249	No Gene Ontology annotation for this domain.
SSF57783    1     249	No Gene Ontology annotation for this domain.
RNA_POL_M_15KD PF02150    1     249	GO:0003677 : DNA binding GO:0003899 : DNA-directed RNA polymerase activity GO:0006350 : transcription

NEW Pfam domains
Domain Information & Certification Details	GO annotation
TFIIS_C PF01096    1     249 Localization E-value Certified by : PF02150 77...115 3.4 39.8%	Domain itself: GO:0003676 : nucleic acid binding GO:0008270 : zinc ion binding GO:0030528 : transcription regulator activity GO:0045449 : regulation of transcription In association with other domains: None

PFA0520c (PlasmoDB link)

Annotation: chromatin assembly factor 1 protein WD40 domain, putative
PlasmoDB Workshop 2008 Reannotation: chromatin assembly factor 1 protein WD40 domain, putative

GO annotation :
GO:0042393 : histone binding
GO:0051082 : unfolded protein binding
GO:0006334 : nucleosome assembly
GO:0005678 : chromatin assembly complex

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
WD40/YVTN_ repeat-like G3DSA:2.130.10.10    1     446	No Gene Ontology annotation for this domain.
WD_REPEATS_2 PS50082    1     446	No Gene Ontology annotation for this domain.
WD_REPEATS_ REGION PS50294    1     446	No Gene Ontology annotation for this domain.
PTHR22850    1     446	No Gene Ontology annotation for this domain.
PTHR22850:SF15    1     446	No Gene Ontology annotation for this domain.
WD40 SM00320    1     446	No Gene Ontology annotation for this domain.
WD40_like SSF50978    1     446	No Gene Ontology annotation for this domain.
WD40 PF00400    1     446	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
WD40 PF00400    1     446 Localization E-value Certified by : PS50082 SM00320 142...182 0.14 20% 20% 240...279 3.7 39% 39%	Domain itself: None In association with other domains: None

PFA0590w (PlasmoDB link)

Annotation: ABC transporter(CT family), PfMRP
PlasmoDB Workshop 2008 Reannotation: ABC transporter, (CT family), putative

GO annotation :
GO:0005524 : ATP binding
GO:0042626 : ATPase activity, coupled to transmembrane movement of substances
GO:0006810 : transport
GO:0016021 : integral to membrane

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:3.40.50.300    1     1822	No Gene Ontology annotation for this domain.
ABC_TRANS- -PORTER_2 PS50893    1     1822	GO:0005524 : ATP binding GO:0016887 : ATPase activity
ABC_TM1F PS50929    1     1822	GO:0005524 : ATP binding GO:0042626 : ATPase activity, coupled to transmembrane movement of substances GO:0006810 : transport GO:0016021 : integral to membrane
PTHR19242    1     1822	No Gene Ontology annotation for this domain.
AAA SM00382    1     1822	GO:0000166 : nucleotide binding GO:0017111 : nucleoside-triphosphatase activity
SSF52540    1     1822	No Gene Ontology annotation for this domain.
ABC_TM_1 SSF90123    1     1822	GO:0005524 : ATP binding GO:0042626 : ATPase activity, coupled to transmembrane movement of substances GO:0006810 : transport GO:0016021 : integral to membrane
ABC_tran PF00005    1     1822	GO:0005524 : ATP binding GO:0016887 : ATPase activity

NEW Pfam domains
Domain Information & Certification Details	GO annotation
ABC_membrane PF00664    1     1822 Localization E-value Certified by : PF00005 PS50893 SM00382 SSF90123 1171...1450 0.0053 4.71% 9.66% 9.66% 9.66%	Domain itself: GO:0005524 : ATP binding GO:0042626 : ATPase activity, coupled to transmembrane movement of substances GO:0006810 : transport GO:0016021 : integral to membrane In association with other domains: None

PFB0160w (PlasmoDB link)

Annotation: ERCC1 nucleotide excision repair protein, putative
PlasmoDB Workshop 2008 Reannotation: ERCC1 nucleotide excision repair protein, putative

GO annotation :
GO:0003684 : damaged DNA binding
GO:0004520 : endodeoxyribonuclease activity
GO:0006289 : nucleotide-excision repair
GO:0005634 : nucleus

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
PTHR12749    1     242	No Gene Ontology annotation for this domain.
RuvA_2_like SSF47781    1     242	No Gene Ontology annotation for this domain.
rad10 TIGR00597    1     242	GO:0003684 : damaged DNA binding GO:0004519 : endonuclease activity GO:0006281 : DNA repair GO:0005634 : nucleus
Rad10 PF03834    1     242	GO:0003684 : damaged DNA binding GO:0004519 : endonuclease activity GO:0006281 : DNA repair GO:0005634 : nucleus

NEW Pfam domains
Domain Information & Certification Details	GO annotation
HHH PF00633    1     242 Localization E-value Certified by : PF03834 TIGR00597 207...236 0.019 4.71% 9.66%	Domain itself: GO:0003677 : DNA binding GO:0005622 : intracellular In association with other domains: None

PFB0280w (PlasmoDB link)

Annotation: hypothetical protein
PlasmoDB Workshop 2008 Reannotation: EPSP-SK, putative

GO annotation :
GO:0003824 : catalytic activity

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
RNA3'_cycl/enol pyr_transf_A/B SSF55205    1     2539	GO:0003824 : catalytic activity

NEW Pfam domains
Domain Information & Certification Details	GO annotation
CM_2 PF01817    1     2539 Localization E-value Certified by : PF01202 2344...2408 2.9 39.1%	Domain itself: GO:0004106 : chorismate mutase activity GO:0009073 : aromatic amino acid family biosynthetic process In association with other domains: None
SKI PF01202    1     2539 Localization E-value Certified by : SSF55205 PF01817 2012...2130 0.014 9.66% 39.1%	Domain itself: GO:0004765 : shikimate kinase activity GO:0005524 : ATP binding In association with other domains: None

PFB0440c (PlasmoDB link)

Annotation: hypothetical protein
PlasmoDB Workshop 2008 Reannotation: conserved Plasmodium protein, unknown function

GO annotation :
GO:0005515 : protein binding
GO:0008270 : zinc ion binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
Znf_RING/FYVE/PHD G3DSA:3.30.40.10    1     587	No Gene Ontology annotation for this domain.
ZF_RING_2 PS50089    1     587	GO:0005515 : protein binding GO:0008270 : zinc ion binding
SPX PS51382    1     587	No Gene Ontology annotation for this domain.
PTHR13982    1     587	No Gene Ontology annotation for this domain.
RING SM00184    1     587	GO:0005515 : protein binding GO:0008270 : zinc ion binding
SSF57850    1     587	No Gene Ontology annotation for this domain.
zf-C3HC4 PF00097    1     587	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
SPX PF03105    1     587 Localization E-value Certified by : PF00097 G3DSA:3.30.40.10 PS50089 SM00184 20...192 6.3e-05 4.71% 9.66% 9.66% 9.66%	Domain itself: None In association with other domains: None

PFB0520w (PlasmoDB link)

Annotation: protein kinase, putative
PlasmoDB Workshop 2008 Reannotation: protein kinase, putative

GO annotation :
GO:0004713 : protein tyrosine kinase activity
GO:0005524 : ATP binding
GO:0006468 : protein amino acid phosphorylation
GO:0005575 : cellular_component

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:1.10.510.10    1     1233	No Gene Ontology annotation for this domain.
PD000001    1     1233	No Gene Ontology annotation for this domain.
TYRKINASE PR00109    1     1233	GO:0004713 : protein tyrosine kinase activity GO:0005524 : ATP binding GO:0006468 : protein amino acid phosphorylation
PROTEIN_ KINASE_DOM PS50011    1     1233	GO:0004672 : protein kinase activity GO:0005524 : ATP binding GO:0006468 : protein amino acid phosphorylation
PTHR23257    1     1233	No Gene Ontology annotation for this domain.
MORN SM00698    1     1233	No Gene Ontology annotation for this domain.
SAM_homology SSF47769    1     1233	No Gene Ontology annotation for this domain.
Kinase_like SSF56112    1     1233	No Gene Ontology annotation for this domain.
MORN PF02493    1     1233	No Gene Ontology annotation for this domain.
Pkinase PF00069    1     1233	GO:0004672 : protein kinase activity GO:0005524 : ATP binding GO:0006468 : protein amino acid phosphorylation

NEW Pfam domains
Domain Information & Certification Details	GO annotation
SAM_2 PF07647    1     1233 Localization E-value Certified by : PF02493 PF00069 PR00109 PS50011 SM00698 855...922 0.17 4.71% 4.71% 20% 20% 20%	Domain itself: None In association with other domains: None

PFB0640c (PlasmoDB link)

Annotation: COPII-coated vesicle component, putative
PlasmoDB Workshop 2008 Reannotation: sec31p putative

GO annotation :
GO:0003674 : molecular_function
GO:0008150 : biological_process
GO:0005575 : cellular_component

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
WD40/YVTN_ repeat-like G3DSA:2.130.10.10    1     1460	No Gene Ontology annotation for this domain.
WD_REPEATS_ REGION PS50294    1     1460	No Gene Ontology annotation for this domain.
PTHR13923    1     1460	No Gene Ontology annotation for this domain.
PTHR13923:SF2    1     1460	No Gene Ontology annotation for this domain.
WD40 SM00320    1     1460	No Gene Ontology annotation for this domain.
WD40_like SSF50978    1     1460	No Gene Ontology annotation for this domain.
WD40 PF00400    1     1460	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
WD40 PF00400    1     1460 Localization E-value Certified by : SM00320 292...330 0.32 20%	Domain itself: None In association with other domains: None

PFC0130c (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: RNA binding protein, conserved

GO annotation :
GO:0003723 : RNA binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
KH SM00322    1     419	GO:0003723 : RNA binding
SSF54791    1     419	No Gene Ontology annotation for this domain.
SSF54928    1     419	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
KH_1 PF00013    1     419 Localization E-value Certified by : PF00076 250...313 0.039 19.5%	Domain itself: GO:0003723 : RNA binding In association with other domains: with PF00076 : GO:0000166 : nucleotide binding GO:0005737 : cytoplasm GO:0006417 : regulation of translation
RRM_1 PF00076    1     419 Localization E-value Certified by : SM00322 PF00013 42...103 1 20% 19.5%	Domain itself: GO:0003676 : nucleic acid binding In association with other domains: with PF00013 : GO:0000166 : nucleotide binding GO:0005737 : cytoplasm GO:0006417 : regulation of translation

PFC0140c (PlasmoDB link)

Annotation: N-ethylmaleimide-sensitive fusion protein, putative
PlasmoDB Workshop 2008 Reannotation: N-ethylmaleimide-sensitive fusion protein, putative

GO annotation :
GO:0005524 : ATP binding
GO:0016887 : ATPase activity
GO:0006888 : ER to Golgi vesicle-mediated transport

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:1.10.8.60    1     783	No Gene Ontology annotation for this domain.
G3DSA:3.10.330.10    1     783	No Gene Ontology annotation for this domain.
G3DSA:3.40.50.300    1     783	No Gene Ontology annotation for this domain.
PTHR23078    1     783	No Gene Ontology annotation for this domain.
AAA SM00382    1     783	GO:0000166 : nucleotide binding GO:0017111 : nucleoside-triphosphatase activity
Asp_decarb_fold SSF50692    1     783	GO:0005488 : binding
SSF52540    1     783	No Gene Ontology annotation for this domain.
SSF54585    1     783	No Gene Ontology annotation for this domain.
AAA PF00004    1     783	GO:0005524 : ATP binding

NEW Pfam domains
Domain Information & Certification Details	GO annotation
CDC48_2 PF02933    1     783 Localization E-value Certified by : PF00004 SM00382 SSF50692 117...181 1.5 19.5% 20% 20%	Domain itself: GO:0005524 : ATP binding In association with other domains: with PF00004 : GO:0044464 : cell part with PF02359 : GO:0044464 : cell part
CDC48_N PF02359    1     783 Localization E-value Certified by : PF00004 1...85 6.3 39.8%	Domain itself: GO:0005524 : ATP binding In association with other domains: with PF00004 : GO:0044464 : cell part with PF02933 : GO:0044464 : cell part
Vps4_C PF09336    1     783 Localization E-value Certified by : PF00004 496...525 12 39.8%	Domain itself: None In association with other domains: None

PFC0170c (PlasmoDB link)

Annotation: dihydrolipoamide acyltransferase, putative
PlasmoDB Workshop 2008 Reannotation: dihydrolipoamide acyltransferase, putative

GO annotation :
GO:0008415 : acyltransferase activity
GO:0008152 : metabolic process

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:2.40.50.100    1     448	No Gene Ontology annotation for this domain.
G3DSA:3.30.559.10    1     448	No Gene Ontology annotation for this domain.
PD001115    1     448	No Gene Ontology annotation for this domain.
BIOTINYL_LIPOYL PS50968    1     448	No Gene Ontology annotation for this domain.
PTHR23151    1     448	No Gene Ontology annotation for this domain.
PTHR23151:SF10    1     448	No Gene Ontology annotation for this domain.
Hybrid_motif SSF51230    1     448	No Gene Ontology annotation for this domain.
SSF52777    1     448	No Gene Ontology annotation for this domain.
2-oxoacid_dh PF00198    1     448	GO:0008415 : acyltransferase activity GO:0008152 : metabolic process
Biotin_lipoyl PF00364    1     448	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
E3_binding PF02817    1     448 Localization E-value Certified by : PF00198 PF00364 PS50968 SSF51230 147...185 0.81 19.5% 19.5% 20% 20%	Domain itself: GO:0005515 : protein binding GO:0008415 : acyltransferase activity GO:0008152 : metabolic process In association with other domains: with PF00198 : GO:0044424 : intracellular part with PF00364 : GO:0044424 : intracellular part

PFC0175w (PlasmoDB link)

Annotation: IBR domain protein, putative
PlasmoDB Workshop 2008 Reannotation: IBR domain protein, putative

GO annotation :
GO:0008270 : zinc ion binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
PTHR11685    1     593	No Gene Ontology annotation for this domain.
PTHR11685:SF11    1     593	No Gene Ontology annotation for this domain.
IBR SM00647    1     593	GO:0008270 : zinc ion binding
SSF57850    1     593	No Gene Ontology annotation for this domain.
IBR PF01485    1     593	GO:0008270 : zinc ion binding

NEW Pfam domains
Domain Information & Certification Details	GO annotation
zf-C3HC4 PF00097    1     593 Localization E-value Certified by : PF01485 SM00647 190...237 0.11 4.71% 20%	Domain itself: None In association with other domains: with PF01485 : GO:0009987 : cellular process

PFC0190c (PlasmoDB link)

Annotation: EH (Eps15 homology) protein
PlasmoDB Workshop 2008 Reannotation: EH (Eps15 homology) protein

GO annotation :
GO:0003924 : GTPase activity
GO:0005509 : calcium ion binding
GO:0005515 : protein binding
GO:0005525 : GTP binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
EF-Hand_type G3DSA:1.10.238.10    1     533	GO:0005509 : calcium ion binding
G3DSA:3.40.50.300    1     533	No Gene Ontology annotation for this domain.
EH PS50031    1     533	No Gene Ontology annotation for this domain.
PTHR11216    1     533	No Gene Ontology annotation for this domain.
PTHR11216:SF31    1     533	No Gene Ontology annotation for this domain.
SSF47473    1     533	No Gene Ontology annotation for this domain.
SSF52540    1     533	No Gene Ontology annotation for this domain.
Dynamin_N PF00350    1     533	GO:0003924 : GTPase activity GO:0005525 : GTP binding

NEW Pfam domains
Domain Information & Certification Details	GO annotation
efhand PF00036    1     533 Localization E-value Certified by : PF00350 486...514 2.4 19.5%	Domain itself: None In association with other domains: None

PFC0260w (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: P-loop containing nucleoside triphospahte hydrolase, putative

GO annotation :
GO:0000166 : nucleotide binding
GO:0017111 : nucleoside-triphosphatase activity
GO:0008152 : metabolic process
GO:0020011 : apicoplast

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:3.40.50.300    1     1114	No Gene Ontology annotation for this domain.
AAA SM00382    1     1114	GO:0000166 : nucleotide binding GO:0017111 : nucleoside-triphosphatase activity
NAD(P)-bd SSF51735    1     1114	GO:0003824 : catalytic activity GO:0005488 : binding GO:0008152 : metabolic process
SSF52540    1     1114	No Gene Ontology annotation for this domain.
Dpy-30 PF05186    1     1114	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
Cir_N PF10197    1     1114 Localization E-value Certified by : SSF51735 972...1009 4.7 39%	Domain itself: None In association with other domains: None
Rad50_zn_hook PF04423    1     1114 Localization E-value Certified by : SM00382 109...156 1.7 20%	Domain itself: GO:0004518 : nuclease activity GO:0005524 : ATP binding GO:0008270 : zinc ion binding GO:0006281 : DNA repair GO:0030870 : Mre11 complex In association with other domains: None

PFC0345w (PlasmoDB link)

Annotation: hypothetical protein
PlasmoDB Workshop 2008 Reannotation: conserved Plasmodium protein, unknown function

GO annotation :
GO:0008270 : zinc ion binding
GO:0005622 : intracellular

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
ZF_BBOX PS50119    1     1711	GO:0008270 : zinc ion binding GO:0005622 : intracellular
MpPF2 PF07665    1     1711	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
zf-B_box PF00643    1     1711 Localization E-value Certified by : PS50119 233...273 0.051 9.66%	Domain itself: GO:0008270 : zinc ion binding GO:0005622 : intracellular In association with other domains: None

PFC0365w (PlasmoDB link)

Annotation: conserved protein, putative
PlasmoDB Workshop 2008 Reannotation: PRP19-like protein, putative

GO annotation :
GO:0004842 : ubiquitin-protein ligase activity
GO:0016567 : protein ubiquitination
GO:0000151 : ubiquitin ligase complex
GO:0016363 : nuclear matrix

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
WD40/YVTN_ repeat-like G3DSA:2.130.10.10    1     532	No Gene Ontology annotation for this domain.
Znf_RING/FYVE/PHD G3DSA:3.30.40.10    1     532	No Gene Ontology annotation for this domain.
PD000018    1     532	No Gene Ontology annotation for this domain.
PR00320    1     532	No Gene Ontology annotation for this domain.
WD_REPEATS_2 PS50082    1     532	No Gene Ontology annotation for this domain.
WD_REPEATS_ REGION PS50294    1     532	No Gene Ontology annotation for this domain.
PTHR13889    1     532	No Gene Ontology annotation for this domain.
PTHR13889:SF6    1     532	No Gene Ontology annotation for this domain.
WD40 SM00320    1     532	No Gene Ontology annotation for this domain.
Ubox SM00504    1     532	GO:0004842 : ubiquitin-protein ligase activity GO:0016567 : protein ubiquitination GO:0000151 : ubiquitin ligase complex
WD40_like SSF50978    1     532	No Gene Ontology annotation for this domain.
SSF57850    1     532	No Gene Ontology annotation for this domain.
Prp19 PF08606    1     532	No Gene Ontology annotation for this domain.
WD40 PF00400    1     532	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
U-box PF04564    1     532 Localization E-value Certified by : PF08606 PF00400 G3DSA:2.130.10.10 PS50082 PS50294 4...60 0.27 19.5% 19.5% 20% 20% 20%   Localization E-value Certified by : SM00320 SSF50978 PF00400 4...60 0.27 20% 20% 19.5%	Domain itself: GO:0004842 : ubiquitin-protein ligase activity GO:0016567 : protein ubiquitination GO:0000151 : ubiquitin ligase complex In association with other domains: None
WD40 PF00400    1     532 Localization E-value Certified by : PF08606 G3DSA:3.30.40.10 PS50082 SM00320 SM00504 189...241 3.6 39.8% 39% 39% 39% 39% 367...405 0.23 19.5% 20% 20% 20% 20%   Localization E-value Certified by : PF04564 189...241 3.6 39.1% 367...405 0.23 19.5%	Domain itself: None In association with other domains: None

PFC0375c (PlasmoDB link)

Annotation: splicing factor, putative
PlasmoDB Workshop 2008 Reannotation: U2 snRNP spliceosome subunit, putative

GO annotation :
GO:0005488 : binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
ARM-like G3DSA:1.25.10.10    1     1386	GO:0005488 : binding
PTHR12097    1     1386	No Gene Ontology annotation for this domain.
ARM-type_fold SSF48371    1     1386	GO:0005488 : binding
HEAT PF02985    1     1386	No Gene Ontology annotation for this domain.
SF3b1 PF08920    1     1386	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
HEAT PF02985    1     1386 Localization E-value Certified by : PF08920 G3DSA:1.25.10.10 SSF48371 649...685 3.7 39.8% 39% 39% 1008...1044 2.3 19.5% 39% 39%	Domain itself: None In association with other domains: None

PFC0420w (PlasmoDB link)

Annotation: calcium-dependent protein kinase 3
PlasmoDB Workshop 2008 Reannotation: calcium-dependent protein kinase 3

GO annotation :
GO:0004683 : calmodulin-dependent protein kinase activity
GO:0005509 : calcium ion binding
GO:0005524 : ATP binding
GO:0006468 : protein amino acid phosphorylation

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
EF-Hand_type G3DSA:1.10.238.10    1     562	GO:0005509 : calcium ion binding
G3DSA:1.10.510.10    1     562	No Gene Ontology annotation for this domain.
PD000001    1     562	No Gene Ontology annotation for this domain.
PD000012    1     562	No Gene Ontology annotation for this domain.
PROTEIN_ KINASE_DOM PS50011    1     562	GO:0004672 : protein kinase activity GO:0005524 : ATP binding GO:0006468 : protein amino acid phosphorylation
EF_HAND_2 PS50222    1     562	No Gene Ontology annotation for this domain.
PTHR22982    1     562	No Gene Ontology annotation for this domain.
PTHR22982:SF13    1     562	No Gene Ontology annotation for this domain.
EFh SM00054    1     562	GO:0005509 : calcium ion binding
S_TKc SM00220    1     562	GO:0004674 : protein serine/threonine kinase activity GO:0005524 : ATP binding GO:0006468 : protein amino acid phosphorylation
SSF47473    1     562	No Gene Ontology annotation for this domain.
Kinase_like SSF56112    1     562	No Gene Ontology annotation for this domain.
Pkinase PF00069    1     562	GO:0004672 : protein kinase activity GO:0005524 : ATP binding GO:0006468 : protein amino acid phosphorylation
efhand PF00036    1     562	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
efhand PF00036    1     562 Localization E-value Certified by : PF00069 PS50011 PS50222 SM00054 SM00220 457...485 0.0023 4.71% 9.66% 9.66% 9.66% 9.66%	Domain itself: None In association with other domains: None

PFC0425w (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: conserved Plasmodium protein, unknown function

GO annotation :
GO:0005515 : protein binding
GO:0008270 : zinc ion binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
Znf_RING/FYVE/PHD G3DSA:3.30.40.10    1     4550	No Gene Ontology annotation for this domain.
PHD SM00249    1     4550	GO:0005515 : protein binding GO:0008270 : zinc ion binding
FYVE_PHD_ZnF SSF57903    1     4550	GO:0008270 : zinc ion binding

NEW Pfam domains
Domain Information & Certification Details	GO annotation
KilA-N PF04383    1     4550 Localization E-value Certified by : G3DSA:3.30.40.10 3198...3287 0.63 20%	Domain itself: None In association with other domains: None
PHD PF00628    1     4550 Localization E-value Certified by : G3DSA:3.30.40.10 SM00249 SSF57903 PF07496 4056...4105 0.0015 9.66% 9.66% 9.66% 9.54%	Domain itself: GO:0005515 : protein binding GO:0008270 : zinc ion binding In association with other domains: None
zf-CW PF07496    1     4550 Localization E-value Certified by : G3DSA:3.30.40.10 SM00249 PF00628 874...909 0.14 20% 20% 9.54%	Domain itself: GO:0008270 : zinc ion binding In association with other domains: None

PFC0440c (PlasmoDB link)

Annotation: helicase, putative
PlasmoDB Workshop 2008 Reannotation: DEAD box helicase, putative

GO annotation :
GO:0003676 : nucleic acid binding
GO:0004386 : helicase activity
GO:0005524 : ATP binding

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
HELICASE_ ATP_BIND_1 PS51192    1     2269	No Gene Ontology annotation for this domain.
HELICASE_CTER PS51194    1     2269	GO:0003676 : nucleic acid binding GO:0004386 : helicase activity GO:0005524 : ATP binding
PTHR18934    1     2269	No Gene Ontology annotation for this domain.
DEXDc SM00487    1     2269	No Gene Ontology annotation for this domain.
HELICc SM00490    1     2269	GO:0003676 : nucleic acid binding GO:0004386 : helicase activity GO:0005524 : ATP binding
SSF52540    1     2269	No Gene Ontology annotation for this domain.
HA2 PF04408    1     2269	GO:0004386 : helicase activity
Helicase_C PF00271    1     2269	GO:0003676 : nucleic acid binding GO:0004386 : helicase activity GO:0005524 : ATP binding

NEW Pfam domains
Domain Information & Certification Details	GO annotation
DEAD PF00270    1     2269 Localization E-value Certified by : PF04408 PF00271 PS51194 SM00490 503...664 1.1e-05 4.71% 4.71% 9.66% 9.66%	Domain itself: GO:0003676 : nucleic acid binding GO:0005524 : ATP binding GO:0008026 : ATP-dependent helicase activity In association with other domains: None

PFC0470w (PlasmoDB link)

Annotation: valine -- tRNA ligase, putative
PlasmoDB Workshop 2008 Reannotation: valine -- tRNA ligase, putative

GO annotation :
GO:0004832 : valine-tRNA ligase activity
GO:0005524 : ATP binding
GO:0006438 : valyl-tRNA aminoacylation
GO:0020011 : apicoplast

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
G3DSA:1.10.730.10    1     1367	No Gene Ontology annotation for this domain.
Rossmann-like_ a/b/a_fold G3DSA:3.40.50.620    1     1367	No Gene Ontology annotation for this domain.
TRNASYNTHVAL PR00986    1     1367	GO:0000166 : nucleotide binding GO:0004832 : valine-tRNA ligase activity GO:0005524 : ATP binding GO:0006412 : translation GO:0006438 : valyl-tRNA aminoacylation GO:0005737 : cytoplasm
PTHR11946    1     1367	No Gene Ontology annotation for this domain.
tRNAsyn_1a_bind SSF47323    1     1367	GO:0004812 : aminoacyl-tRNA ligase activity GO:0005524 : ATP binding GO:0006418 : tRNA aminoacylation for protein translation GO:0005737 : cytoplasm
SSF52374    1     1367	No Gene Ontology annotation for this domain.

NEW Pfam domains
Domain Information & Certification Details	GO annotation
Anticodon_1 PF08264    1     1367 Localization E-value Certified by : G3DSA:3.40.50.620 PR00986 PF00133 1136...1298 0.029 9.66% 9.66% 9.54%	Domain itself: GO:0000166 : nucleotide binding GO:0004812 : aminoacyl-tRNA ligase activity GO:0005524 : ATP binding GO:0006412 : translation GO:0006418 : tRNA aminoacylation for protein translation GO:0005737 : cytoplasm In association with other domains: None
tRNA-synt_1 PF00133    1     1367 Localization E-value Certified by : PR00986 SSF47323 PF08264 240...622 0.00077 9.66% 9.66% 9.54%	Domain itself: GO:0000166 : nucleotide binding GO:0004812 : aminoacyl-tRNA ligase activity GO:0005524 : ATP binding GO:0006412 : translation GO:0006418 : tRNA aminoacylation for protein translation GO:0005737 : cytoplasm In association with other domains: None

PFC0475c (PlasmoDB link)

Annotation: hypothetical protein, conserved
PlasmoDB Workshop 2008 Reannotation: phosphatidylinositol 3- and 4-kinase, putative

GO annotation :
GO:0016773 : phosphotransferase activity, alcohol group as acceptor

No Gene Ontology annotation brought by combinations of known domains for this protein.

KNOWN Interpro and Pfam domains
Domain Information	GO annotation
PTHR15245    1     953	No Gene Ontology annotation for this domain.
PTHR15245:SF11    1     953	No Gene Ontology annotation for this domain.
PI3_PI4_kinase PF00454    1     953	GO:0016773 : phosphotransferase activity, alcohol group as acceptor

NEW Pfam domains
Domain Information & Certification Details	GO annotation
ubiquitin PF00240    1     953 Localization E-value Certified by : PF00454 35...107 8.3 39.8%	Domain itself: GO:0006464 : protein modification process In association with other domains: None