Protein PVX_086140 (PlasmoDB link) - New domain RRM_1 (Pfam link)

Sequence and domain localizations (colored) at: 17...82 / 501...569 

   1 MAKRRDKKNTPVDRHKVFVRNIRENDVAPLEEEFKKICTKYFFFKNKNNSTKSAICSFKS   60
  61 DREAENFIQKYHNKKIQTSSIKCEFSFRKKYDDKKLISITYRRQKINHLNSIQLYTNCDV  120
 121 DSIVVLSYLKNLFLLNRRLLVNCLDEHDQAERKASPRERGSQGGDGKVPPRGNTQIDKGE  180
 181 GHSEQSTQKSDGDKSDVPSDGDDVQVVAEKKLKEFEEIVLNIEKANRNLDNRTRQKLIEK  240
 241 TSSKNKAVRKNKAISKNKALGKNCFIYTVEFLNLKLAALFYTYINKNNFVNYMEDNVKNW  300
 301 EKKNIFFFHELCYFHKNNRRVIVKNIKRTCHVENLQKLFRHIEKDPSIYIPKKNNKKQGY  360
 361 ALVTFSSYQNLKKALLLNKSKVCGSIITVEEDRNPRLLKLLGVQASAAGERSKDGTDDGG  420
 421 RSGDETDREEINEGDTDDEETNEGDTDDEEIHEGDTNDEETNDEETNEGDTDDEEADDAE  480
 481 QRDHGKRTRDRTNDVEEGKTLFITNIPMGTTDEEVQSYIAKNISKNYIYIRTCRNNGKKI  540
 541 SAFVKLKHKEDADTFLKKIGEYHEEEEDEEEDEENQNDAKNENVIDKFYNMKKKKERMKQ  600
 601 ILLKDHNSGKNAEILFFKNNYLMIKRAVSKDSLKDKKKFPMEEEKKKKQKNRLQNNIHLV  660
 661 EDNDINNDHLRENIIKRNNNLMEKKKQLLKNKNFLINPCRIYVRNYPASLEQNLFRQLIT  720
 721 KYFTPLFMEKHNLKKKEAFKRANEIVKKMKIMKDHTEQKEPTQNEQKNKKLKDKKNSNKN  780
 781 AQNLICFIDINKHEHAKQIIHLLQNRNIYELINEIIYKKKFQTIRKNKNIMYVDYCIEDI  840
 841 RMVHIKKLKEEKFLNHIREKNGAATNSLTKKTIKKKKKKQSRGKRQREKRRLLRMQNENT  900
 901 NVAHVIKSTSSIHVQQSNGTTGQEKKNAQTNGAHKVSATKKKSKLKLKLKEKRLNQGAHS  960
 961 KEAGKKKNGPFQPGEKKENTKKKTSKKLIKKAGKKSATKKDKEIVRNEKKKKKKKKTRYP 1020
1021 SRG 1023

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 17...82 
 1 lfVgNtteedLkdlFskfGpiesikivrDetgrskGfaFVeFedeedAekAldalnGkel 59
17 VFVRNIRENDVAPLEEEFKKICTKYFFFKNKNNSTKSAICSFKSDREAENFIQKYHNKKI 76

61 ggrelr 66
77 QTSSIK 82
Occurence 501...569 
  1 lfVgNLppdtteedLkdlFskfGpiesikivrretgrskGfaFVeFedeedAekAldlnG  59
501 LFITNIPMGTTDEEVQSYIAKNISKNYIYIRTCRNNGKKISAFVKLKHKEDADTFLKKIG 560

 61 kelggrelr  69
561 EYHEEEEDE 569