Protein PVX_092140 (PlasmoDB link) - New domain SMC_hinge (Pfam link)

Sequence and domain localizations (colored) at: 801...965 

   1 MQPKRNERDQAKESKGDEEDEFGTGSGTDGEKNEGSNHIMTGSAKVDDQDFNNFINEEYL   60
  61 DASDESSFNFSITKPIHLDYANGGKKYAVLKGMYSGGGGDGERTAKGEAPPGGGVVNPTG  120
 121 ELTKGDTLVRGGKAAERNGGAPPMEQQRDAHEDNPNDANSVGSESGGNLACVPQVSGLLP  180
 181 VSGLPPVSGLLPVSGPPPVSTAQMEFPNEYLHNSSIASSVGYRENELCSIKYLVVCNFKS  240
 241 YEGENIIGPFSKFTAIIGPNGSGKSNIMDCICFVLGIPNKCLRVKSMRHLIHHKENEKVE  300
 301 VLKRRKCYVKLILERNKENVQMNVEIKRTLNYRGVSNYYIDDKPVEHREYISFLKKNRIE  360
 361 TKTKTCLIFQGDIEEVINKKPNELAKLLEHISGSDEYEQVYEDMKEKLKEKQMACKSYLN  420
 421 EKKKIEQEIKIHKMQINDNIEQNQLKEEHESDVKTFYLFRLYHLHRKKEKLKEDLLTYKE  480
 481 EKLEFEQEVLSKDKQVASHLEKSKLVKKKSLLKVEDEIRSYRTEVNRLKVALNEIGEKKK  540
 541 YNQDCLSKVLASQKLQMNIQTHCERFSQNLHQQVKEQVRKMRTQIANKLGVIRKFLDKCT  600
 601 HVKGYIQERHAALYDSFVKAERRLRLSGGGADQEGKTAPLTEEEEKNLFDRCNLLDVIEN  660
 661 LSEYKKCKEKYLYLCANSNISINNFNSLASALKKDIKELQEECDNLCRKKQKEVLDYEAE  720
 721 KLTMEEVAGRVSTVNALIEGDQEKVQNEKAHLRELHQTILQKEKRIEELENEVDMLNVHR  780
 781 NELLLLEKRKEVICNLKNLFGEDQIYDEVSSLYEVSNHVYFTAVNNAIHKYNSFLVVKDV  840
 841 DVAVKCIRYLKDNKLHKMDFIPLESFLRNVQMKRRGGAARGAAQLGESRYTNEDPLARAS  900
 901 LDDPSRASTEDPHLMDAVMNAFKKKNIVLANNCLVCDEQFKLLFDYLIGRNTLIVERIKD  960
 961 AEDVRSKFPQLNANMVTLNGHIVSKHNNIIVDISSSSSHGDKERYSNRRLNISMYNKLVR 1020
1021 EKEECRSVISDCKKKIIQANEQINKSNYELELNKKKVASLLIKKGIFQKEVEGKLATIKS 1080
1081 YEERIAKIRDVQMKKKMDSLDGYEAELMKERKGLASFQKDSFKALNERFQIENIYEAIER 1140
1141 SSKEMEKIDDQIDRIKNNIKKLNDDLNELTDKRNEIELFQKKEKAANQEENIQLDIYKLS 1200
1201 EEEKEHSHKMNQTESAIREREAERDNHLKNLSQINQELNNLRESISSNFEKYEAMQSRVD 1260
1261 NCRKKIRIYGTMVRDLIGECDMNGVNVFAAGLAIADEGGGKLPSPRGGGPPPRKGRASKL 1320
1321 LQGSDESGEVSGGEVSGDVSGSGSGSGSEGGGGGADLTLANVSFDALPDELKQMDSEQQI 1380
1381 DAQREKLEKEIERKKKLLKMRNVNASAEKEYEQLLSKLKQIDASLSNERKECNLFERNFR 1440
1441 ILQKKRSYKFLHCFNYIKNVIDNVYNNLTYSVKHHVGGQAFLDLFNLNEFNKDDEPFYCG 1500
1501 IRYNNMPPMKRFFEISELSGGEKSMSALALIFSIQKYISNSFIILDEVDANMDPIKMSSL 1560
1561 ARYLNSINSQVIVISLKEKFFSKSQTLIGVYKSKHKKCSRTVTLDICRYRQGE 1613

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 801...965 
  1 asgv.lGrvadlisVkekgyekAleaaLGadLdavvVdnaeaakkaleelkkarlGRaTf  59
801 GEDQiYDEVSSLYEVSNHVYFTAVNNAIHKYNSFLVVKDVDVAVKCIRYLKDNKLHKMDF 860

 61 lPLdkialpegatplaglvrlpa..................................... 119
861 IPLESFLRNVQMKRRGGAARGAAqlgesrytnedplaraslddpsrastedphlmdavmn 920

121 ...........dlidydpelrkalrrlLg.qtlvVedldeArrla 165
921 afkkknivlanNCLVCDEQFKLLFDYLIGrNTLIVERIKDAEDVR 965