Protein PVX_098025 (PlasmoDB link) - New domain RNA_pol_Rpb1_1 (Pfam link)

Sequence and domain localizations (colored) at: 9...606 

   1 MYDVNKAVSVEVRSAELGVLTSEELRRVSLGKYQSELLEYEKMNSSGVTSKMYFDPKYGT   60
  61 IDYRQICSVCFERHENCVGHIGHLEFSLPLFNPLFYKDLCELLGLVCLDCFQVCCSEDTI  120
 121 FLLKHIYQLRALNEIESSNRIVCKRSYDREHVVGEIERLYRRISEQHKGGGAGGQHCGSE  180
 181 EEVDAMDYGSEAEGQNCGSEAEGQKYASEAEGQHHSSEADGQHRGETGPAPAKLQKLKEK  240
 241 ISMFKFDPTKLAFQSNYNYEEYLQLTKTLKLLMKKSGRCPACKGRRNISARMSQKRDTIN  300
 301 FVGVYLQNSFLKKYMQVGRKREQAGPAAPGEEDLEDLVERDEGLAAEEAAEEAADYGDAA  360
 361 DHDDAANADYAATPATPANAASAASAASAARESFPQMVRSYKKQNAKEKSTVRLFSFQVI  420
 421 DLLEKVFRKNDREVMHLLYPFTKRDGHKVFFLYDMGISANRFRVKLRGVHKKTKMISVLS  480
 481 KFNALLNLCISAKKEIDFEELLERNKRELHLYKEMFGLFSIRMKYKFNADLMDEDTEITK  540
 541 IDFLRSYDLIYRNKSAYINILFSNLQVALNTFFDSTFAAHLPNAKMSNQGVREILDKKEG  600
 601 ILRKNIMGKRVNNCARTVISPDTFIETNQIGVPLEFAKKLTMDECITENNFDYVKRLILN  660
 661 GPDIYPGALSYRDSRGNVFKLSTDYEKRVLLIKQLERMNLKKQCTTLVLHRHARDGDIVI  720
 721 MNRQPTLHKFSIMAHFIKIFEREKVFRLNYVNCSSYNADFDGDEMNLHLLQTAHARSEAT  780
 781 HLMNSDFLFTSFKDGSPLRGLAQDFILGGLHLTSLETFLNYDEYCNLLQCALNCLLSRKD  840
 841 CFFFEAGPRARRGGRPGNAVKSSKGGDPTNEGNAANTANTAAPPTQGPWKLRNHSYLDPY  900
 901 AVVLNRTHFTIVTEEPAILFPRRLWTGKQLITSILKTIIDQVAVETYNHRRDNHFMKNYK  960
 961 GINYYAKAKTDPSLWSFDPKNECEVIIKNSELLQGVLDKLHFGASSNSFVHLCYELFGPK 1020
1021 TAAVMLDCFGRLFISFLQLRGTSLSLYDFILKKDAREEKLKIRKRISFTGFYLQNLFTHS 1080
1081 IAKALNVNVSQMNAYSRGKMNSHSENNEVYVNGLFGLYRRRGALLRDFPKGSAPLGGAQQ 1140
1141 REKLPPSEKLPPSEKLPPSEKLPPSEKLPPSEELPPSEEQLDVKEEAYFSALLDKEMQHL 1200
1201 LARRPGEEPPATPTSSPASRVERALNRMVGLEAGVAGIAEERPPPRLRAAPVRQLFRSLS 1260
1261 EPSFMESPNFAGDKATKVIERIVRFLKRANCSRRLKVYILFELFQSKSVLKHFPALASCV 1320
1321 NDLSQEVSNEEILHHVLSSVSAERAQEQPGQGGGGAATQEMLSKFLRLLEDMEGCTAEGH 1380
1381 QGSGQESDQESGQESGQESGEPYGGDDQKNDQSYGAPLGEPPPRVNEHDERMIRNCLKKS 1440
1441 FPSFLLNDEIGNLSFNGKEHYYEDCVNQKGTDEDTTFQFYNMKDVFNKLEYLIHTYFLQM 1500
1501 RGDFDGLIDSLFQPYLCRVSSNTNNLISMENLMNKFLNNGFSNMIFTGAKGSKVNYAMIC 1560
1561 GMLDQQYLEGKRVPRMRSGKTLPSFHRYDYGARACGLITDCFLEGLRPQEYFFHCMSGRE 1620
1621 GLIDTAVKTAKSGYIQRCLIKCMESVILHYDGTVRNEDNAIVQFLYGEDGIDPSRISYLD 1680
1681 SSRDLLSNYQVAFSKYLLHDEVPRMQRNERLFWGSGESGESGGGSETDQRCDGEDGDGRG 1740
1741 VPGDPLETRFSPYAYIGATSERFREKLRHTIANDLNLADCYNLPEDFDSLSASLLKSKYF 1800
1801 RSLCDPGESIGILVAQSFGEPATQMTLNTFHLAGTENVTMGIPRLKEIFLTSKLTSKPMI 1860
1861 YVPIKMEARGATGNDASEMKNYINEIADKILSTYKSICLSDVIYGVGVDRKLILREPGAK 1920
1921 NTQMHTLRVVSNQAEEDQHMHGQYVSPPPEGDVQAAKVMNALQNTQLSFKIKKEWSYEIV 1980
1981 IQFENLHHFCKVNSHITLQAILSKAVNCVLCSVLSKIQESLHSYNIRHVHSFNHEHYDEL 2040
2041 FSFVCAKMQEEFNFSMEKFEYKNDEDKINAKLKFMASRGGATANEMDAAVVRDENYIDEG 2100
2101 DCYNGGAAGRSGGGASGKYADRGEDALSDEVDGNDDRDGGGSHAGDDRHGGAKRSSNSDS 2160
2161 DGGNEGDNDGERDPDSVSEEDNDYDESERSEPSEPSEREEVGIEEVGIEEVGIEEVGIEE 2220
2221 VGSEEVGSEEVGSEKGATSEEELLDEGDAAPLRSARERRKRGRSPERESQLSDASDVPST 2280
2281 DKGFSSAQSVTQNDAPEGKSGRGGSGRGRKAVGVTAANVAAANVAAANVDAANVTAANVS 2340
2341 AANVTAATAAKGSPLSERSTSAERLGEDAYTEESEAYREEDEADREEYEADREEDEADRE 2400
2401 EDEADRDENEPNRDDEWERRMARDFANLAYDYKNNVNLRNESDEEDDGMAGQDGTSKLQS 2460
2461 ENKKCVNNIIDKLKCSLLCFVKNISFSPVTWTLKFEIGWDINFFPHAIDFLSYVQTELGK 2520
2521 EILFKVKDLNNPKILKGKDITHTGAEYELQIEGKNIYKLYNIKDKYIDKTKLYCNDIYTI 2580
2581 VKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDLKSFSRHGLGCFRNV 2640
2641 FHKMSFECATNFLTQGCVHNSVDYLSTASSSLFFGKPIKVGTNVADIVTHIEGSG 2695

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 9...606 
  1 lkkikevqFGiaSpeeIrkwSvvetkpetynygkPepgGL.....lDermGtikkksiCe  59
  9 SVEVRSAELGVLTSEELRRVSLGKYQSELLEYEKMNSSGVtskmyFDPKYGTIDYRQICS  68

 61 TCgvelteCpGHFGHIeLakPVfHIGFfkkilsiLrcvCklCsslllnesvkfelkvvkk 119
 69 VCFERHENCVGHIGHLEFSLPLFNPLFYKDLCELLGLVCLDCFQVCCSEDTIFLLKHIYQ 128

121 pkgknkkkrlkkinckkksvcehcgeknggvkkals........................ 179
129 LRALNEIESSNRIVCKRSYDREHVVGEIERLYRRISeqhkgggaggqhcgseeevdamdy 188

181 ............................................................ 239
189 gseaegqncgseaegqkyaseaegqhhsseadgqhrgetgpapaklqklkekismfkfdp 248

241 ............................................................ 299
249 tklafqsnynyeeylqltktlkllmkksgrcpackgrrnisarmsqkrdtinfvgvylqn 308

301 ............................................................ 359
309 sflkkymqvgrkreqagpaapgeedledlverdeglaaeeaaeeaadygdaadhddaana 368

361 ............................................................ 419
369 dyaatpatpanaasaasaasaaresfpqmvrsykkqnakekstvrlfsfqvidllekvfr 428

421 ..........ydnslkilhepfgl.dngcgkkqpkiskdGaeallallkkisdLeeenee 479
429 kndrevmhllYPFTKRDGHKVFFLyDMGISANRFRVKLRGVHKKTKMISVLSKFNALLNL 488

481 lkeelreikaeeLnpekvlqikIskedveilgfnpsgsrPewmldggrdIik....rNnr 539
489 CISAKKEIDFEELLERNKRELHLYKEMFGLFSIRMKYKFNADLMDEDTEITKidflRSYD 548

541 LkkeeegapshiireeLQehVatlfDNseipgqppalqksKSisqRLKGKeGRFRGNL 598
549 LIYRNKSAYINILFSNLQVALNTFFDSTFAAHLPNAKMSNQGVREILDKKEGILRKNI 606