Protein PVX_100970 (PlasmoDB link) - New domain RRM_1 (Pfam link)

Sequence and domain localizations (colored) at: 1208...1271 

   1 MNKITLANRYHEHMYHYLNNQPVRKEEFTYFDGKQVDANTVGADASVPSGTMGVDQMNNT   60
  61 NTQEGKANKRSGDPNGSNGHIANTCLGSNRRSLSKNNGVKKGNPNNNDDAAYNKGASSSC  120
 121 VKSNFEEHKKGSALSGKRKKNGQVGSASCGGLAGEATNGRGVEIVSKGSDNNKSTVRGVS  180
 181 NGNADAGAAAGAVADVVTASVVSYHNRRPADVRSGKAVRNFRGSVYGEVNLGEGATYHPI  240
 241 CYDSTDRHMGNGENKDAQVLNERAVGKMGSNLLGKDNANFGDPFTNNCSGAQRAFSDKMG  300
 301 LSSISRLVSHANGSFEKEEEALIQFGKCANRETNRNGQAEEMDDGEEDHEGDNEVVKKGD  360
 361 LRHMPSCSFSSYYRSDTVEGGTTSSDVKEVSPIVTAVYDCGNPCAGEKRSKKQWKRGIGK  420
 421 RDPPHTDNKGKTSVDCGGRSGEEHAGSNHGEVAICNMGGSVNQSSNIGLGKQTNESSNSV  480
 481 LRNGSVGSKNDRGNGGNRNKQQNRKNSKGKNSASKAANGKGEARATGAHAEVGGEGNAAH  540
 541 EVNEVNDTDEANEENDANEASDANNAKANQDSCPAQPPNGADDLINLATLQNCANSRGSP  600
 601 VDSANASTMKSAGADVDLLFFRENEDPLEEHYMLLEEGDYAVHQVRERAGEKETAGEKET  660
 661 AGEKETGGEKETGGEKETAWERDIAGEKETAWERDIAGEKDTAWERDIAGEKDTAWERDI  720
 721 AGEKDTAWERDIAGEKDTAWERDIAGEKDTAWERDIAGEKDTAWERDIAGEKETAWEKDT  780
 781 TGEKDMAGLNHTFNILRNNLYHIFSDSCDEQCSDECLVGSLDDAAGRSRNRGSECVSFVD  840
 841 VHRGDVHRVGMESAVGQRGMAQSGLMERGLMERVLMERGLLQRGLTERRLMEGGLMERGL  900
 901 MERDLLQRSLINQWGAAQPPSYEEDAEEDKLGTNDLLSGSRAFRGQYPLSDAPFSGLLQA  960
 961 PCVSGLIGSAPYVPSARGIPPHSRYGVSGVSGVGNVPAVGSIGSACGSVVGKPTGHGLNG 1020
1021 AHQPPFAPNNQKRTNLSGAAGKKCGMETHLNSRSGNSVNGKESVDLHKCKQTANENMTVE 1080
1081 RPVTLNNSQMLEAFMQGRLCLSCDSLDHPMPLCPNNSFVCPNCHNISHRGNDCPMKCRFC 1140
1141 LKYHVGVSIMDCLKKARIQSEKNLPNEEKNETNKMGMGKNAKSSQDKVSVGPRFDISTRP 1200
1201 DNSYGRSVYVSNLTQDITNVQLRDAINNHLENGCVVNIDRQDGYAFVELSNLNSTFQLVQ 1260
1261 KSINLNFRKLKIQFKKTGQFLIPDNLSLSVNNAVPFGLHRGGVGGAAPTLVQNKLGKSAT 1320
1321 TAVSRKNPSSGVNSNALSSGSGTASGNAAEVCGKLRLGGSKGGGNNSASGVALPGGADGR 1380
1381 GKYACKSTSAKHPRAQQQRRQNTQQGQQMQQTQQTQLQPVLPTLPTLPTQAAQAAHSGQA 1440
1441 APQRKGRQRENLKQGRAAPPHGAPAVDKNPSAKAILSQKKNKLVGEKNTEKGRRGRPADG 1500
1501 TVPTMSSADGSYGADGSYGAVGSYGAVGSYGAAEGGTSFQGGKNTHSVEIPSVQIVNLPS 1560
1561 DYLLAEHLDGAKIGGVSEEEEEEEEAAAEEGMSRNGYDFMCTNGLALKSGHVKKATDVNS 1620
1621 MPLLPALYSGGGSSNDANDPFTSEAANVGLLYEGSKLPLKMPNGVNEKNELHKSMTTETS 1680
1681 KTTATTTTASDNMLSTQLFNTQLFNAQLFNAQLFNTQVFNGVPPMRRSLHKVDDIMKETH 1740
1741 LSAAMEVSGAAAMNGKLTSCWSASLGEGLFAGHGEVSGEYGGECGGAYLGPHNDRFTADA 1800
1801 YNDRRYRASSGNQHGNAAEGRPNVDLKSIVDNAIEVNHDTLNYEQLSFADAAEEGLLHDA 1860
1861 APANAPGAYTLGECDVAGVRDAAGLYHSYENYTGQNKTHSNKKSVVGPYISFEASVNGGN 1920
1921 IWKDRNGGRVGSGGIGGIGGSRHPPDLKHSYDNICDDMFFGNRDIYDVFSGFSAIQLDDR 1980
1981 SGGSRGSGGCGGAGHPFAVGSNQHKGSFDRNSYSNPNCGQNALHQVPPVPNEPTDEESKM 2040
2041 ESEAGSKMKLQAGNKMKLPADSKMKLQAGGNINFVNLSSEIFQQPRDLPAKEEGDLMEDS 2100
2101 YVSSMKYKELDAIEKDLEKHIKALWNLRKIKLVRSHDVPQGIPQDVPQDEFV 2152

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 1208...1271 
   1 lfVgNLppdtteedLkdlFskfpiesikivrDrskGfaFVeFedeedAekAldnGkelgg   59
1208 VYVSNLTQDITNVQLRDAINNHLENGCVVNIDRQDGYAFVELSNLNSTFQLVQKSINLNF 1267

  61 relr   64
1268 RKLK 1271